Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3088 |
Symbol | rumA |
ID | 6272896 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 2885137 |
End bp | 2886438 |
Gene Length | 1302 bp |
Protein Length | 433 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641727015 |
Product | 23S rRNA 5-methyluridine methyltransferase |
Protein accession | YP_001881474 |
Protein GI | 187731305 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000000000282752 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGCAAT TCTACTCTGC AAAACGACGC ACGACGACGC GTCAGATCAT AACCGTTTCA GTCAACGACC TCGACTCTTT TGGTCAGGGC GTGGCGCGAC ATAACGGCAA AACGCTATTT ATCCCCGGAT TATTGCCGCA GGAAAACGCG GAAGTTACTG TTACTGAAGA TAAAAAACAG TATGCCCGCG CTAAAGTCGT ACGCCGGTTA AGCGATAGCC CGGAACGCGA AACGCCACGC TGTCCTCATT TTGGAGTATG CGGCGGCTGT CAGCAACAAC ACGCCAGCGT GGATTTACAG CAGCGAAGCA AAAGTGCGGC ACTCGCCCGA TTAATGAAAC ACGAAGTCTC TGAAGTGATC GCCGATGTTC CCTGGGGCTA TCGCCGTCGC GCGCGTTTAA GTCTGAACTA CTTACCGAAA ACACAGCAAC TTCAGATGGG GCTTCGCAAA GCGGGCTCCA GTGACATTGT CGACGTTAAA CAATGTCCCA TTTTAGTGCC CCAACTTGAA GCATTGCTGC CCAAAGTCAG GGCATGCCTG GGCAGCTTAC AAGCAATGCG CCATCTTGGT CATGTTGAAC TGGTACAGGC AACCAGCAGC ACGCTGATGA TTTTGCGCCA TACCGCACCG CTAAGTTCGG CAGATCGCGA AAAACTGGAA CGCTTTTCGC ATTCTGAAGG CCTGGATCTG TATCTCGCCC CCGATAGTGA GATACTCGAA ACCGTCTCTG GTGAGATGCC CTGGTATGAC TCTAACGGGT TGCGCTTAAC TTTTAGCCCG CGCGATTTTA TTCAGGTCAA TGCGGGTGTG AACCAAAAAA TGGTAGCGAG TGCGTTGGAA TGGCTGGATG TGCAACCTGA AGATCGCGTA CTGGATCTGT TCTGCGGTAT GGGCAACTTT ACACTGCCAT TGGCGACACA AGCTGCCAGT GTGGTCGGTG TAGAAGGTGT TCCGGCGCTG GTGGAAAAAG GCCAGCAGAA TGCGCGTCTT AATGGCTTAC AGAATGTGAC GTTTTATCAC GAAAATCTTG AAGAAGATGT CACAAAGCAG CCGTGGGCGA AAAACGGCTT CGATAAAGTG TTGCTGGACC CGGCGCGAGC AGGTGCCGCA GGTGTTATGC AGCAAATTAT AAAACTGGAA CCTATTCGTA TAGTTTATGT ATCCTGTAAC CCTGCAACGC TGGCTCGGGA TAGCGAAGCG TTATTAAAAG CAGGATATAC CATTGCGCGA CTGGCGATGC TGGATATGTT CCCACACACG GGACATCTGG AATCGATGGT ACTTTTCTCG CGCGTTAAAT AG
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Protein sequence | MAQFYSAKRR TTTRQIITVS VNDLDSFGQG VARHNGKTLF IPGLLPQENA EVTVTEDKKQ YARAKVVRRL SDSPERETPR CPHFGVCGGC QQQHASVDLQ QRSKSAALAR LMKHEVSEVI ADVPWGYRRR ARLSLNYLPK TQQLQMGLRK AGSSDIVDVK QCPILVPQLE ALLPKVRACL GSLQAMRHLG HVELVQATSS TLMILRHTAP LSSADREKLE RFSHSEGLDL YLAPDSEILE TVSGEMPWYD SNGLRLTFSP RDFIQVNAGV NQKMVASALE WLDVQPEDRV LDLFCGMGNF TLPLATQAAS VVGVEGVPAL VEKGQQNARL NGLQNVTFYH ENLEEDVTKQ PWAKNGFDKV LLDPARAGAA GVMQQIIKLE PIRIVYVSCN PATLARDSEA LLKAGYTIAR LAMLDMFPHT GHLESMVLFS RVK
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