Gene SbBS512_E3088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E3088 
SymbolrumA 
ID6272896 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp2885137 
End bp2886438 
Gene Length1302 bp 
Protein Length433 aa 
Translation table11 
GC content51% 
IMG OID641727015 
Product23S rRNA 5-methyluridine methyltransferase 
Protein accessionYP_001881474 
Protein GI187731305 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 
TIGRFAM ID[TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000282752 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGCAAT TCTACTCTGC AAAACGACGC ACGACGACGC GTCAGATCAT AACCGTTTCA 
GTCAACGACC TCGACTCTTT TGGTCAGGGC GTGGCGCGAC ATAACGGCAA AACGCTATTT
ATCCCCGGAT TATTGCCGCA GGAAAACGCG GAAGTTACTG TTACTGAAGA TAAAAAACAG
TATGCCCGCG CTAAAGTCGT ACGCCGGTTA AGCGATAGCC CGGAACGCGA AACGCCACGC
TGTCCTCATT TTGGAGTATG CGGCGGCTGT CAGCAACAAC ACGCCAGCGT GGATTTACAG
CAGCGAAGCA AAAGTGCGGC ACTCGCCCGA TTAATGAAAC ACGAAGTCTC TGAAGTGATC
GCCGATGTTC CCTGGGGCTA TCGCCGTCGC GCGCGTTTAA GTCTGAACTA CTTACCGAAA
ACACAGCAAC TTCAGATGGG GCTTCGCAAA GCGGGCTCCA GTGACATTGT CGACGTTAAA
CAATGTCCCA TTTTAGTGCC CCAACTTGAA GCATTGCTGC CCAAAGTCAG GGCATGCCTG
GGCAGCTTAC AAGCAATGCG CCATCTTGGT CATGTTGAAC TGGTACAGGC AACCAGCAGC
ACGCTGATGA TTTTGCGCCA TACCGCACCG CTAAGTTCGG CAGATCGCGA AAAACTGGAA
CGCTTTTCGC ATTCTGAAGG CCTGGATCTG TATCTCGCCC CCGATAGTGA GATACTCGAA
ACCGTCTCTG GTGAGATGCC CTGGTATGAC TCTAACGGGT TGCGCTTAAC TTTTAGCCCG
CGCGATTTTA TTCAGGTCAA TGCGGGTGTG AACCAAAAAA TGGTAGCGAG TGCGTTGGAA
TGGCTGGATG TGCAACCTGA AGATCGCGTA CTGGATCTGT TCTGCGGTAT GGGCAACTTT
ACACTGCCAT TGGCGACACA AGCTGCCAGT GTGGTCGGTG TAGAAGGTGT TCCGGCGCTG
GTGGAAAAAG GCCAGCAGAA TGCGCGTCTT AATGGCTTAC AGAATGTGAC GTTTTATCAC
GAAAATCTTG AAGAAGATGT CACAAAGCAG CCGTGGGCGA AAAACGGCTT CGATAAAGTG
TTGCTGGACC CGGCGCGAGC AGGTGCCGCA GGTGTTATGC AGCAAATTAT AAAACTGGAA
CCTATTCGTA TAGTTTATGT ATCCTGTAAC CCTGCAACGC TGGCTCGGGA TAGCGAAGCG
TTATTAAAAG CAGGATATAC CATTGCGCGA CTGGCGATGC TGGATATGTT CCCACACACG
GGACATCTGG AATCGATGGT ACTTTTCTCG CGCGTTAAAT AG
 
Protein sequence
MAQFYSAKRR TTTRQIITVS VNDLDSFGQG VARHNGKTLF IPGLLPQENA EVTVTEDKKQ 
YARAKVVRRL SDSPERETPR CPHFGVCGGC QQQHASVDLQ QRSKSAALAR LMKHEVSEVI
ADVPWGYRRR ARLSLNYLPK TQQLQMGLRK AGSSDIVDVK QCPILVPQLE ALLPKVRACL
GSLQAMRHLG HVELVQATSS TLMILRHTAP LSSADREKLE RFSHSEGLDL YLAPDSEILE
TVSGEMPWYD SNGLRLTFSP RDFIQVNAGV NQKMVASALE WLDVQPEDRV LDLFCGMGNF
TLPLATQAAS VVGVEGVPAL VEKGQQNARL NGLQNVTFYH ENLEEDVTKQ PWAKNGFDKV
LLDPARAGAA GVMQQIIKLE PIRIVYVSCN PATLARDSEA LLKAGYTIAR LAMLDMFPHT
GHLESMVLFS RVK