Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3060 |
Symbol | csdA |
ID | 6271980 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 2858580 |
End bp | 2859785 |
Gene Length | 1206 bp |
Protein Length | 401 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 641726990 |
Product | cysteine sulfinate desulfinase |
Protein accession | YP_001881451 |
Protein GI | 187730199 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0520] Selenocysteine lyase |
TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily [TIGR03392] cysteine desulfurase, catalytic subunit CsdA |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00000299944 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACGTTT TTAATCCCGC GCAGTTTCGC GCCCAGTTTC CCGCACTACA GGATGCGGGC GTCTATCTCG ACAGCGCCGC GACCGCGCTT AAACCTGAAG CCGTGGTTGA AGCCACTCGA CAGTTTTACA GCCTGAGCGC CGGAAACGTC CATCGCAGCC AGTTTGCCGA AGCCCAACGC CTGACCGCGC GTTATGAAGC TGCACGAGAG AAAGTGGCGC AATTACTGAA TGCACCGGAT GATAAAACTA TCGTCTGGAC GCGCGGCACC ACTGAATCCA TCAACATGGT GGCACAATGC TATGCGCGTC CGCGTCTGCA ACCGGGCGAT GAGATTATTG TCAGCGTGGC AGAACACCAC GCCAACCTCG TCCCCTGGCT GATGGTCGCC CAACAAACTG GAGCCAAAGT GGTGAAATTG CCGCTTAATG CGCAGCGACT GCCGGATGTC GATTTGTTGC CAGAACTGAT TACTCCCCGT AGTCGGATTC TGGCGTTGAG TCAGATGTCG AACGTTACTG GCGGTTGCCC GGATCTGGCG CGAGCGATTA CCTTTGCTCA TTCAGCAGGG ATGGTGGTGA TGGTTGATGG TGCTCAGGGG GCGGTGCATT TCCCCGCGGA TGTTCAGCAA CTGGATATCG ATTTCTATGC TTTCTCTGGT CACAAACTGT ATGGCCCGAC GGGTATCGGC GTGCTGTATG GCAAATCAGA ACTGCTGGAA GCGATGTCGC CCTGGCTGGG TGGCGGCAAA ATGATTCACG AAGTGAGTTT TGACGGCTTC ACGACTCAAT CTGCGCCGTG GAAACTGGAA GCAGGAACGC CAAATGTGGC TGGTGTCATA GGATTAAGCG CGGCGCTGGA ATGGCTGGCA GATTACGATA TCAACCAGGC CGAAAACTGG AGCCATAGCT TAGCAACGCT GGCGGAAGAT GCGCTGGCGA AACGTCCAGG CTTTCGTTCA TTCCGCTGCC AGGATTCCAG CCTGCTGGCC TTTGATTTTG CTGGCGTTCA TCACAGCGAT ATGGTGACGC TACTGGCGGA GTACGGTATT GCCTTGCGGG CCGGGCAACA TTGCGCTCAG CCGCTACTGG CAGAATTAGG CGTAACCGGC ACACTGCGCG CCTCTTTTGC GCCATATAAT ACAAAGAGTG ATGTGGATGC GCTGGTGAAT GCCGTTGACC GCGCGCTGGA ATTATTGGTG GATTAA
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Protein sequence | MNVFNPAQFR AQFPALQDAG VYLDSAATAL KPEAVVEATR QFYSLSAGNV HRSQFAEAQR LTARYEAARE KVAQLLNAPD DKTIVWTRGT TESINMVAQC YARPRLQPGD EIIVSVAEHH ANLVPWLMVA QQTGAKVVKL PLNAQRLPDV DLLPELITPR SRILALSQMS NVTGGCPDLA RAITFAHSAG MVVMVDGAQG AVHFPADVQQ LDIDFYAFSG HKLYGPTGIG VLYGKSELLE AMSPWLGGGK MIHEVSFDGF TTQSAPWKLE AGTPNVAGVI GLSAALEWLA DYDINQAENW SHSLATLAED ALAKRPGFRS FRCQDSSLLA FDFAGVHHSD MVTLLAEYGI ALRAGQHCAQ PLLAELGVTG TLRASFAPYN TKSDVDALVN AVDRALELLV D
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