Gene SbBS512_E3043 details

Gene Information

• Locus tag: SbBS512_E3043
• Symbol: recD
• ID: 6273318
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: +
• Start bp: 2845978
• End bp: 2847804
• Gene Length: 1827 bp
• Protein Length: 608 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 641726976
• Product: exonuclease V subunit alpha
• Protein accession: YP_001881440
• Protein GI: 187733473
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
• TIGRFAM ID: [TIGR01447] exodeoxyribonuclease V, alpha subunit

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 0.225396
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATTGC AAAAGCAATT ACTGGAAGCT GTGGAGCACA AACAGCTACG CCCGCTGGAT 
GTGCAATTTG CCCTGACCGT GGCGGGAGAT GAACATCCTG CCGTCACCCT CGCGGCGGCA 
CTGTTAAGTC ATGATGCCGG AGAGGGACAC GTCTGTTTGC CGCTTTCACG ACTGGAAAAT 
AACGAGGCGT CGCATCCGCT GTTGGCGACC TGTGTCAGTG AAATCGGTGA GCTACAAAAT 
TGGGAAGAAT GCTTGCTGGC TTCTCAAGCG GTCAGCAGGG GAGATGAACC CACGCCGATG 
ATCCTCTGTG GCGATCGTCT TTATTTGAAT CGCATGTGGT GTAACGAGCG GACGGTAGCG 
CGCTTCTTCA ATGAGGTGAA TCATGCCATT GAGGTTGATG AAGCTCTACT GGCGCAAACC 
CTGGACAAAC TTTTTCCAGT AAGCGATGAA ATTAACTGGC AAAAAGTTGC AGCGGCAGTG 
GCGCTGACGC GGCGGATCTC GGTGATTTCC GGCGGCCCAG GCACCGGTAA AACGACCACC 
GTGGCGAAGT TGCTGGCAGC GTTAATTCAA ATGGCCGACG GCGAACGCTG CCGTATCCGT 
CTGGCTGCAC CAACGGGTAA AGCTGCCGCG CGCTTAACCG AATCTCTCGG CAAGGCTTTG 
CGACAGTTAC CGCTGACCGA TGAACAAAAG AAACGCATTC CGGAAGATGC CAGCACTTTG 
CACCGATTGC TGGGCGCGCA GCCGGGTAGC CAGCGTTTAC GTCATCATGC CGGTAACCCG 
CTGCATCTTG ATGTGCTGGT GGTAGATGAA GCGTCAATGA TCGATCTGCC TATGATGTCG 
AGACTGATCG ACGCCTTGCC CGATCATGCG CGAGTGATCT TTCTCGGCGA TCGTGATCAA 
CTGGCCTCGG TTGAGGCTGG GGCTGTGCTG GGCGATATCT GCGCTTATGC CAACGCGGGC 
TTTACCGCCG AGCGTGCCAG GCAGCTAAGC CGCCTGACGG GGACTCACGT TCCGGCAGGA 
ACCGGCACAG AAGCGGCATC TTTGCGCGAC AGTCTCTGCC TGCTGCAAAA AAGCTATCGT 
TTCGGCAGCG ATTCTGGCAT TGGTCAGTTA GCTGCGGCGA TCAACCGTGG TGATAAAACG 
GCAGTGAAAA CCGTTTTTCA GCAGGATTTT ACTGATATCG AAAAACGACT TTTACAGAGC 
GGCGAAGATT ATATTGCGAT GCTTGAGGAA GCTCTTGCGG GTTATGGACG TTATCTGGAT 
CTGCTGCAAG CGCGTGCCGA GCCGGATTTA ATCATTCAGG CGTTCAATGA GTACCAACTT 
TTGTGCGCCC TGCGGGAAGG GCCGTTTGGC GTGGCTGGAC TGAATGAGCG AATTGAGCAG 
TTTATGCAAC AGAAGCGCAA AATTCATCGT CATCCGCACT CTCGTTGGTA CGAAGGTCGA 
CCGGTGATGA TTGCCCGTAA TGACAGCGCG CTTGGGTTGT TTAATGGCGA TATCGGTATT 
GCACTGGATC GCGGGCAGGG GACGCGCGTC TGGTTTGCGA TGCCGGACGG CAATATTAAG 
TCTGTGCAAC CGAGTCGCTT GCCAGAGCAC GAAACTACGT GGGCGATGAC GGTACATAAA 
TCGCAGGGAT CGGAGTTCGA CCATGCGGCG TTGATTTTAC CGAGCCAACG CACGCCGGTA 
GTAACGCGAG AGCTGGTATA CACCGCGGTG ACCCGCGCGC GTCGCCGTCT GTCGCTGTAT 
GCCGATGAGC GTATATTAAG TGCGGCAATC GCCACTCGTA CTGAGCGGCG CAGTGGTCTG 
GCGGCGTTGT TTAGTTCGCG GGAATAA 

 

Protein sequence

MKLQKQLLEA VEHKQLRPLD VQFALTVAGD EHPAVTLAAA LLSHDAGEGH VCLPLSRLEN 
NEASHPLLAT CVSEIGELQN WEECLLASQA VSRGDEPTPM ILCGDRLYLN RMWCNERTVA 
RFFNEVNHAI EVDEALLAQT LDKLFPVSDE INWQKVAAAV ALTRRISVIS GGPGTGKTTT 
VAKLLAALIQ MADGERCRIR LAAPTGKAAA RLTESLGKAL RQLPLTDEQK KRIPEDASTL 
HRLLGAQPGS QRLRHHAGNP LHLDVLVVDE ASMIDLPMMS RLIDALPDHA RVIFLGDRDQ 
LASVEAGAVL GDICAYANAG FTAERARQLS RLTGTHVPAG TGTEAASLRD SLCLLQKSYR 
FGSDSGIGQL AAAINRGDKT AVKTVFQQDF TDIEKRLLQS GEDYIAMLEE ALAGYGRYLD 
LLQARAEPDL IIQAFNEYQL LCALREGPFG VAGLNERIEQ FMQQKRKIHR HPHSRWYEGR 
PVMIARNDSA LGLFNGDIGI ALDRGQGTRV WFAMPDGNIK SVQPSRLPEH ETTWAMTVHK 
SQGSEFDHAA LILPSQRTPV VTRELVYTAV TRARRRLSLY ADERILSAAI ATRTERRSGL 
AALFSSRE