Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3040 |
Symbol | recC |
ID | 6271569 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 2836011 |
End bp | 2839379 |
Gene Length | 3369 bp |
Protein Length | 1122 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641726973 |
Product | exonuclease V subunit gamma |
Protein accession | YP_001881437 |
Protein GI | 187731174 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1330] Exonuclease V gamma subunit |
TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTTAAGGG TCTACCATTC CAATCGTCTG GACGTGCTGG AAGCGTTGAT GGAGTTTATT GTCGAACGCG AACGGCTGGA CGATCCTTTC GAACCAGAGA TGATTCTGGT GCAAAGTACC GGTATGGCAC AGTGGCTGCA AATGACCCTG TCGCAAAAGT TTGGTATTGC GGCAAACATT GATTTTCCGC TGCCTGCGAG CTTTATCTGG GATATGTTCG TCCGGGTGTT ACCGGAGATC CCCAAAGAGA GCGCCTTTAA CAAACAGAGC ATGAGCTGGA AACTGATGAC TCTGCTGCCA CAACTGTTGG AGCACGAAGA CTTTACCCTG TTGCGGCATT ATCTGACTGA CGATAGCGAC AAGCGAAAAC TGTTCCAGCT TTCCTCAAAA GCGGCGGACC TGTTTGACCA GTATCTGGTC TATCGCCCGG AGTGGCTGGC ACAATGGGAA ACAGGACATT TGGTTGAAGG GCTGGGAGAA GCACAGGCCT GGCAAGCGCC GTTGTGGAAG GCGCTGGTGG AATATACCCA TGAACTCGGA CAACCGCGCT GGCACCGCGC GAATCTCTAT CAGCGCTTTA TCGAAACGCT GGAGTCCGCG ACGACCTGCC CGCCGGGGTT ACCTTCGCGC GTCTTTATAT GCGGTATTTC CGCGTTACCG CCTGTTTATC TCCAGGCGCT CCAGGCGCTG GGTAAACATA TTGAAATCCA TCTCCTGTTT ACCAACCCCT GCCGTTATTA CTGGGGCGAT ATTAAAGATC CTGCTTATCT GGCGAAACTG CTGACTCGTC AGCGTCGACA CAGTTTTGAA GATCGCGAAT TGCCGCTATT TCGCGATAGC GAAAATGCCG GACAGCTCTT TAACAGCGAT GGTGAACAGG ATGTCGACAA CCCGCTGCTG GCCTCATGGG GGAAGCTTGG GCGCGACTAC ATTTATCTCC TTTCTGACCT GGAGAGCAGC CAGGAGCTGG ACGCCTTTGT CGATGTCACG CCAGATAACC TGCTGCATAA CATTCAGTCT GACATTCTGG AACTGGAAAA CCGTGCCGTT GCTGGTGTGA ACATCGAAGA GTTTTCCCGT AGCGATAACA AACGCCCGCT TGATCCACTG GATAGCAGTA TCACCTTCCA CGTTTGCCAT AGCCCGCAGC GTGAAGTTGA AGTTTTGCAC GATCGCCTGC TGGCGATGCT GGAAGAAGAC CCGACACTTA CTCCGCGCGA CATCATCGTG ATGGTGGCTG ATATCGACAG CTACAGTCCG TTTATTCAGG CTGTGTTTGG TAGCGCACCT GCGGATCGTT ACCTGCCTTA CGCCATTTCC GACCGTCGGG CGCGGCAGTC GCATCCGGTA CTGGAAGCGT TTATCAGCCT GTTATCGTTG CCAGACAGCC GCTTTGTGTC GGAAGACGTG CTGGCATTAC TGGATGTGCC GGTGCTGGCG GCGCGGTTTG ACATCACCGA AGAAGGGCTG CGTTATTTAC GCCACTGGGT CAACGAATCC GGCATTCGTT GGGGGATAGA TGACGACAAC GTTCGCGAGC TGGAACTCCC CGCCACCGGA CAACACACCT GGCGATTTGG CCTGACGCGT ATGTTGCTGG GCTACGCGAT GGAGAGCGCG CAGGGCGAGT GGCAATCGGT TCTACCTTAT GATGAGTCGA GCGGCTTAAT TGCAGAACTG GTGGGGCATC TGGCTTCACT GCTAATGCAG CTAAACATCT GGCATCGCGG GCTGGCACAG GAGCGTCCGC TAGAAGAGTG GTTGCCGGTT TGTCGCGATA TGCTCAACGC CTTCTTCCTG CCGGATGCGG AAACCGAAGC GGCGATGACG CTGATCGAAC AACAATGGCA GGCGATTATC GCCGAAGGTT TAGGTGCGCA GTATGGCGAC GCGGTGCCGC TGTCACTATT GCGTGATGAA CTGGCACAGC GTCTGGATCA AGAACGTATC AGCCAGCGTT TTCTCGCCGG ACCGGTTAAC ATTTGTACTC TGATGCCAAT GCGTTCAATT CCGTTCAAAG TGGTTTGCCT GCTGGGAATG AACGACGGCG TTTATCCACG TCAGCTTGCG CCATTGGGCT TTGACCTGAT GAGCCAGAAA CCGAAGCGTG GCGACCGTAG CCGTCGCGAT GACGACCGCT ACCTGTTCCT GGAAGCGTTA ATTTCCGCGC AGCAAAAACT CTATATCAGT TATATCGGGC TTTCCATTCA GGATAACAGT GAACGTTTCC CGTCGGTACT GGTGCAGGAA CTGATCGACT ACATCGGGCA AAGTCATTAT CTACCGGGCG ATGAAGCGCT CAACTGTGAT GAAAGCGAGG CAAGGGTAAA AGCGCATCTT ACCTGCCTCC ATACCCGGAT GCCGTTTGAT CCACAAAACT ACCAGCCAGG CGAACGACAA AGCTATGCTC GTGAATGGCT ACCTGCGGCC AGCCGGGCTG GTAAAGCACA TTCTGAATTT GTTCAGCCGC TGCCGTTTAC CTTACCGGAA ACCGTGCCGC TGGAAACGCT ACAACGATTC TGGGCACATC CGGTGCGGGC ATTTTTCCAG ATGCGTTTGC AGGTGAACTT CCGTACCGAA GACAGCGAAA TCCCCGACAC CGAGCCATTT ATTCTGGAAG GGCTTAGCCG TTATCAAATC AATCAGCAGT TATTGAATGC ACTGGTTGAG CAGGATGATG CCGAACGCTT GTTCCGTCGC TTCCGGGCGG CAGGGGATTT ACCGTATGGC GCTTTTGGTG AAATTTTCTG GGAAACTCAG TGCCAGGAGA TGCAGCAGCT TGCCGACAGA GTCATTGCCT GTCGCCAGCC GGGGCAGAGT ATGGAAATTG ATCTCGCCTG CAACGGTGTG CAGATAACTG GCTGGTTGCC GCAGGTGCAG CCGGATGGCC TGTTGCGCTG GCATCCCTCT TTATTAAGTG TGGCGCAGGG AATGCAACTT TGGCTGGAAC ACCTTGTCTA CTGTGCCAGC GGTGGTAATG GTGAAAGTCG CCTTTTTCTA CGCAAAGACG GCGAGTGGCG TTTTCCGCCG CTTGCAGCCG AACAGGCTTT GCATTACCTC TCACAACTGA TTGAGGGGTA TCGTGAAGGG ATGTCCGCGC CATTGCTGGT GTTACCTGAA AGTGGCGGCG CGTGGCTAAA AACCTGTTAT GACGCGCAAA ACGATGCCAT GCTGGATGAC GATTCCACGT TGCAAAAAGC CCGTACGAAA TTCCTTCAGG CTTACGAAGG CAACATGATG GTGCGTGGCG AAGGTGATGA TATCTGGTAT CAAAGGCTCT GGCGGCAATT AACACCAGAG ACAATGGAGG CCATCGTTGA ACAGTCGCAA CGTTTCCTGT TACCGCTGTT TCGCTTTAAT CAGTCATGA
|
Protein sequence | MLRVYHSNRL DVLEALMEFI VERERLDDPF EPEMILVQST GMAQWLQMTL SQKFGIAANI DFPLPASFIW DMFVRVLPEI PKESAFNKQS MSWKLMTLLP QLLEHEDFTL LRHYLTDDSD KRKLFQLSSK AADLFDQYLV YRPEWLAQWE TGHLVEGLGE AQAWQAPLWK ALVEYTHELG QPRWHRANLY QRFIETLESA TTCPPGLPSR VFICGISALP PVYLQALQAL GKHIEIHLLF TNPCRYYWGD IKDPAYLAKL LTRQRRHSFE DRELPLFRDS ENAGQLFNSD GEQDVDNPLL ASWGKLGRDY IYLLSDLESS QELDAFVDVT PDNLLHNIQS DILELENRAV AGVNIEEFSR SDNKRPLDPL DSSITFHVCH SPQREVEVLH DRLLAMLEED PTLTPRDIIV MVADIDSYSP FIQAVFGSAP ADRYLPYAIS DRRARQSHPV LEAFISLLSL PDSRFVSEDV LALLDVPVLA ARFDITEEGL RYLRHWVNES GIRWGIDDDN VRELELPATG QHTWRFGLTR MLLGYAMESA QGEWQSVLPY DESSGLIAEL VGHLASLLMQ LNIWHRGLAQ ERPLEEWLPV CRDMLNAFFL PDAETEAAMT LIEQQWQAII AEGLGAQYGD AVPLSLLRDE LAQRLDQERI SQRFLAGPVN ICTLMPMRSI PFKVVCLLGM NDGVYPRQLA PLGFDLMSQK PKRGDRSRRD DDRYLFLEAL ISAQQKLYIS YIGLSIQDNS ERFPSVLVQE LIDYIGQSHY LPGDEALNCD ESEARVKAHL TCLHTRMPFD PQNYQPGERQ SYAREWLPAA SRAGKAHSEF VQPLPFTLPE TVPLETLQRF WAHPVRAFFQ MRLQVNFRTE DSEIPDTEPF ILEGLSRYQI NQQLLNALVE QDDAERLFRR FRAAGDLPYG AFGEIFWETQ CQEMQQLADR VIACRQPGQS MEIDLACNGV QITGWLPQVQ PDGLLRWHPS LLSVAQGMQL WLEHLVYCAS GGNGESRLFL RKDGEWRFPP LAAEQALHYL SQLIEGYREG MSAPLLVLPE SGGAWLKTCY DAQNDAMLDD DSTLQKARTK FLQAYEGNMM VRGEGDDIWY QRLWRQLTPE TMEAIVEQSQ RFLLPLFRFN QS
|
| |