Gene SbBS512_E3037 details

Gene Information

• Locus tag: SbBS512_E3037
• Symbol: ppdB
• ID: 6271386
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: +
• Start bp: 2834723
• End bp: 2835286
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 641726970
• Product: hypothetical protein
• Protein accession: YP_001881434
• Protein GI: 187730337
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4795] Type II secretory pathway, component PulJ
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 40
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTGTAA AAGAGCAAGG TTTTTCTCTG CTGGAAGTGT TGATTGCTAT GGCGATCAGT 
AGCGTATTGT TGCTGGGGGC TGCACGCTTT CTGCCTGCGT TACAGCGTGA AAGTTTAACG 
AGCACCCGTA AGCTGGCGCT GGAAGATGAA ATCTGGCTGC GGGTATTTAC CGTCGCGAAG 
CATCTCCAGA GGGCGGGTTA TTGTCATGGC ATCTGTACCG GCGAAGGGCT GGAAATTGTC 
GGACAGGGTG ACTGTATCAT TGTGCAGTGG GATGCGAACA GTAACGGTAT CTGGGATCGC 
GAACCGGTAA AAGAGTCCGA CCAGATTGGA TTTCGTCTGA AGGAGCATGT GCTGGAAACG 
CTACGCGGTG CGACATCCTG TGAAGGTAAG GGCTGGGATA AAGTCACTAA TCCGGATGCC 
ATCATTATCG ACACTTTTCA GGTCGTACGT CAGGATGTCA GCGGCTTCTC GCCGGTGTTG 
ACGGTTAATA TGCGTGCTGC CAGTAAGTCT GAACCGCAAA CCGTGGTGAA TGCCAGCTAT 
AGCGTGACAG GATTCAACCT GTGA 

 

Protein sequence

MPVKEQGFSL LEVLIAMAIS SVLLLGAARF LPALQRESLT STRKLALEDE IWLRVFTVAK 
HLQRAGYCHG ICTGEGLEIV GQGDCIIVQW DANSNGIWDR EPVKESDQIG FRLKEHVLET 
LRGATSCEGK GWDKVTNPDA IIIDTFQVVR QDVSGFSPVL TVNMRAASKS EPQTVVNASY 
SVTGFNL