Gene SbBS512_E2997 details

Gene Information

• Locus tag: SbBS512_E2997
• Symbol: rimM
• ID: 6270403
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: -
• Start bp: 2796354
• End bp: 2796902
• Gene Length: 549 bp
• Protein Length: 182 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 641726933
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_001881398
• Protein GI: 187730041
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.00151494
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAAAC AACTCACCGC GCAAGCACCT GTTGATCCCA TCGTTTTGGG AAAAATGGGT 
TCGTCTTACG GTATTCGTGG GTGGCTCAGA GTGTTTTCTT CCACCGAAGA CGCCGAAAGC 
ATTTTTGACT ATCAGCCCTG GTTTATCCAG AAGGCGGGTC AGTGGCAGCA AGTCCAGCTG 
GAAAGCTGGA AGCACCACAA TCAGGACATG ATCATCAAGC TGAAAGGCGT TGACGATCGT 
GATGCGGCGA ACCTGCTGAC GAATTGTGAA ATTGTCGTGG ATTCATCGCA GTTGCCTCAG 
CTTGAAGAGG GTGACTACTA CTGGAAAGAC CTGATGGGCT GCCAGGTAGT AACCACTGAA 
GGCTACGATC TCGGTAAAGT CATCGATATG ATGGAAACCG GATCTAATGA CGTTCTCGTC 
ATTAAGGCAA ACCTGAAAGA TGCGTTTGGT ATCAAGGAAC GTCTCGTACC GTTCCTCGAT 
GGGCAGGTTA TCAAGAAAGT CGATCTCACT ACTCGTTCAA TCGAAGTAGA TTGGGATCCT 
GGTTTTTAA 

 

Protein sequence

MSKQLTAQAP VDPIVLGKMG SSYGIRGWLR VFSSTEDAES IFDYQPWFIQ KAGQWQQVQL 
ESWKHHNQDM IIKLKGVDDR DAANLLTNCE IVVDSSQLPQ LEEGDYYWKD LMGCQVVTTE 
GYDLGKVIDM METGSNDVLV IKANLKDAFG IKERLVPFLD GQVIKKVDLT TRSIEVDWDP 
GF