| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E2996 |
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| Symbol | trmD |
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| ID | 6270906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | - |
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| Start bp | 2795556 |
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| End bp | 2796323 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641726932 |
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| Product | tRNA (guanine-N(1)-)-methyltransferase |
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| Protein accession | YP_001881397 |
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| Protein GI | 187730506 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.045069 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTGGATTG GCATAATTAG CCTGTTTCCT GAAATGTTCC GCGCAATTAC CGATTACGGG
GTAACTGGCC GGGCAGTTAA AAATGGCCTG CTGAGCATCC AGAGCTGGAG TCCTCGCGAC
TTCACGCATG ACCGGCACCG TACCGTGGAC GATCGTCCTT ACGGCGGCGG ACCGGGGATG
TTAATGATGG TGCAACCCTT GCGGGACGCC ATTCATGCAG CAAAAGCCGC GGCGGGTGAA
GGCGCAAAGG TGATTTATCT GTCACCACAG GGACGCAAGC TTGATCAAGC GGGCGTCAGC
GAATTGGCAA CGAATCAAAA ATTGATTCTG GTGTGCGGTC GCTACGAAGG TATAGATGAG
CGCGTGATCC AAACCGAAAT TGACGAAGAA TGGTCAATCG GCGATTACGT TCTCAGTGGT
GGTGAGTTAC CAGCAATGAC GCTGATTGAC TCCGTTTCCC GGTTTATTCC GGGGGTACTG
GGACATGAAG CCTCGGCAAC GGAAGATTCC TTTGCTGAAG GATTGCTGGA TTGCCCGCAC
TATACGCGGC CTGAGGTGTT AGAAGGGATG GAAGTTCCGC CAGTGTTACT GTCGGGCAAC
CATGCCGAGA TACGTCGCTG GCGTTTGAAA CAGTCGCTGG GCCGTACCTG GCTTAGAAGA
CCTGAACTTC TGGAAAACCT GGCTCTGACT GAAGAGCAAG CAAGGTTGCT GGCGGAGTTC
AAAACGGAAC ACGCACAACA GCAACATAAA CATGATGGGA TGGCGTAA
|
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| Protein sequence | MWIGIISLFP EMFRAITDYG VTGRAVKNGL LSIQSWSPRD FTHDRHRTVD DRPYGGGPGM
LMMVQPLRDA IHAAKAAAGE GAKVIYLSPQ GRKLDQAGVS ELATNQKLIL VCGRYEGIDE
RVIQTEIDEE WSIGDYVLSG GELPAMTLID SVSRFIPGVL GHEASATEDS FAEGLLDCPH
YTRPEVLEGM EVPPVLLSGN HAEIRRWRLK QSLGRTWLRR PELLENLALT EEQARLLAEF
KTEHAQQQHK HDGMA
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