Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E2975 |
Symbol | rluD |
ID | 6269120 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 2781503 |
End bp | 2782483 |
Gene Length | 981 bp |
Protein Length | 326 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641726917 |
Product | 23S rRNA pseudouridine synthase D |
Protein accession | YP_001881382 |
Protein GI | 187732689 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.0427325 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCACAAC GAGTACAGCT CACTGCAACG GTGTCCGAAA ACCAACTCGG TCAACGCTTA GATCAGGCTT TGGCCGAAAT GTTCCCGGAT TATTCACGTT CGCGAATAAA AGAATGGATC CTCGACCAGC GCGTGCTGGT AAACGGCAAA GTTTGTGATA AGCCGAAAGA AAAAGTATTG GGTGGCGAGC AGGTTGCCAT CAACGCTGAG ATTGAAGAAG AAGCGCGTTT TGAACCGCAG GATATCCCGC TGGATATTGT CTATGAAGAT GAAGATATCA TCGTCATTAA TAAACCGCGC GACCTGGTGG TACATCCTGG CGCGGGTAAC CTGGATGGCA CGGTACTGAA TGCGTTGCTT CATTATTATC CGCCCATTGC CGATGTACCG CGTGCGGGCA TCGTCCATCG TCTGGATAAA GACACCACTG GCCTGATGGT TGTGGCAAAA ACCGTTCCGG CTCAGACGCG TTTAGTCGAA TCTTTGCAAA GGCGTGAAAT TACTCGTGAG TATGAAGCGG TGGCAATTGG TCATATGACC GCTGGCGGTA CAGTAGATGA ACCAATCAGC CGCCACCCGA CCAAACGTAC TCACATGGCG GTGCATCCCA TGGGCAAACC GGCGGTCACT CACTATCGCA TCATGGAACA CTTCCGTGTG CACACGCGTC TGCGGTTGCG TCTGGAAACC GGACGTACGC ACCAGATCCG CGTGCATATG GCGCATATTA CCCATCCGCT GGTGGGCGAT CCGGTTTATG GTGGCCGTCC GCGTCCGCCA AAAGGTGCTT CGGAAGCGTT TATCTCCACG CTGCGTAAGT TTGACCGCCA GGCGCTTCAT GCAACTATGC TGCGTCTTTA TCACCCGATC TCCGGCATCG AAATGGAATG GCATGCGCCT ATTCCAGAAG ATATGGTGGA GTTGATTGAG GTTATGCGCG CCGATTTCGA AGAGCATAAG GATGAAGTGG ACTGGTTATG A
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Protein sequence | MAQRVQLTAT VSENQLGQRL DQALAEMFPD YSRSRIKEWI LDQRVLVNGK VCDKPKEKVL GGEQVAINAE IEEEARFEPQ DIPLDIVYED EDIIVINKPR DLVVHPGAGN LDGTVLNALL HYYPPIADVP RAGIVHRLDK DTTGLMVVAK TVPAQTRLVE SLQRREITRE YEAVAIGHMT AGGTVDEPIS RHPTKRTHMA VHPMGKPAVT HYRIMEHFRV HTRLRLRLET GRTHQIRVHM AHITHPLVGD PVYGGRPRPP KGASEAFIST LRKFDRQALH ATMLRLYHPI SGIEMEWHAP IPEDMVELIE VMRADFEEHK DEVDWL
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