Gene SbBS512_E2938 details

Gene Information

• Locus tag: SbBS512_E2938
• Symbol: rpoE
• ID: 6268650
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: -
• Start bp: 2744551
• End bp: 2745126
• Gene Length: 576 bp
• Protein Length: 191 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 641726883
• Product: RNA polymerase sigma factor RpoE
• Protein accession: YP_001881352
• Protein GI: 187732376
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family; [TIGR02939] RNA polymerase sigma factor RpoE

Plasmid Coverage information

• Num covering plasmid clones: 31
• Plasmid unclonability p-value: 0.497445
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGAGC AGTTAACGGA CCAGGTCCTG GTTGAACGGG TCCAGAAGGG AGATCAGAAA 
GCCTTTAACT TACTGGTAGT GCGCTATCAG CATAAAGTGG CGAGTCTGGT TTCCCGCTAT 
GTGCTGTCGG GTGATGTTCC CGATGTGGTA CAAGAAGCTT TTATTAAAGC CTATCGTGCG 
CTGGATTCGT TCCGGGGAGA TAGCGCTTTT TATACATGGC TGTATCGGAT TGCTGTAAAT 
ACAGCGAAAA ATTACCTGGT TGCTCAGGGG CGTCGTCCAC CTTCCAGTGA TGTGGATGCC 
ATTGAAGCTG AAAACTTCGA AAGTGGCGGC GCGTTGAAAG AAATTTCGAA CCCTGAGAAC 
TTAATGTTGT CAGAAGAACT GAGACAGATA GTTTTCCGAA CTATTGAGTC CCTCCCGGAA 
GATTTGCGCA TGGCAATAAC CTTGCGGGAG CTGGATGGCC TGAGCTATGA AGAGATAGCC 
GCTATCATGG ATTGTCCGGT AGGTACGGTG CGTTCACGTA TCTTCCGAGC GAGGGAAGCT 
ATTGATAACA AAGTTCAACC GCTTATCAGG CGTTGA 

 

Protein sequence

MSEQLTDQVL VERVQKGDQK AFNLLVVRYQ HKVASLVSRY VLSGDVPDVV QEAFIKAYRA 
LDSFRGDSAF YTWLYRIAVN TAKNYLVAQG RRPPSSDVDA IEAENFESGG ALKEISNPEN 
LMLSEELRQI VFRTIESLPE DLRMAITLRE LDGLSYEEIA AIMDCPVGTV RSRIFRAREA 
IDNKVQPLIR R