Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E2742 |
Symbol | oxc |
ID | 6272325 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 2544953 |
End bp | 2546647 |
Gene Length | 1695 bp |
Protein Length | 564 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641726703 |
Product | putative oxalyl-CoA decarboxylase |
Protein accession | YP_001881182 |
Protein GI | 187731638 |
COG category | [E] Amino acid transport and metabolism [H] Coenzyme transport and metabolism |
COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
TIGRFAM ID | [TIGR03254] oxalyl-CoA decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAGATC AACTTCAAAT GACAGATGGT ATGCATATCA TCGTTGAAGC ATTAAAACAG AATAATATTG ACACTATTTA TGGTGTTGTA GGTATTCCTG TGACGGATAT GGCACGCCAT GCCCAGGCGG AAGGCATTCG TTATATTGGT TTTCGTCATG AGCAGTCGGC AGGCTATGCC GCTGCGGCAA GCGGTTTTCT TACCCAAAAA CCGGGGATCT GCCTGACAGT TTCTGCGCCA GGATTCCTCA ATGGTTTGAC GGCATTGGCC AACGCAACGG TAAATGGTTT TCCGATGATC ATGATTAGCG GCTCCAGCGA CCGCGCGATC GTCGACCTAC AGCAAGGTGA TTATGAAGAG CTGGACCAAA TGAATGCGGC AAAACCGTAT GCCAAAGCAG CATTTCGCGT TAATCAGCCG CAGGATCTTG GCATTGCATT GGCACGCGCT ATCCGGGTCT CTGTATCGGG TCGCCCTGGC GGAGTTTATC TTGATTTGCC AGCAAATGTC CTGGCCGCGA CGATGGAAAA AGACGAAGCG TTAACCACGA TTGTTAAAGT TGAAAATCCG TCGCCAGCAT TATTGCCATG CCCGAAGTCA GTCACTAGCG CAATTTCGCT TTTAGCAAAA GCTGAACGGC CATTAATTAT CCTTGGCAAA GGCGCGGCGT ATTCACAAGC TGATGAACAG CTTCGTGAAT TTATTGAAAG TGCTCAGATT CCATTCCTGC CAATGTCTAT GGCGAAAGGG ATCCTTGAAG ATACGCATCC ACTTTCTGCG GCAGCTGCGC GTTCGTTTGC CCTGGCAAAT GCTGACGTTG TCATGCTTGT TGGTGCACGA CTGAATTGGT TATTGGCACA CGGTAAAAAA GGATGGGCGG CAGATACACA GTTTATTCAA CTGGATATTG AACCGCAGGA AATTGACAGC AACCGCCCCA TTGCTGTGCC AGTCATTGGT GATATTGCAT CCAGTATGCA AGGTATGCTG GCAGAACTGA AACAAAACAC ATTTACGACT CCACTGGTAT GGCGCGATAT TTTAAATATC CACAAGCAGC AAAATGCACA AAAAATGCAT GAAAAATTAA GTACAGATAC TCAACCATTA AATTACTTTA ATGCATTAAG TGCTGTGCGC GACGTATTGC GCGAGAACCA GGATATTTAT TTAGTTAATG AAGGTGCAAA TACCCTGGAT AATGCACGAA ATATTATTGA TATGTATAAA CCACGTCGTC GTCTGGATTG TGGTACCTGG GGTGTCATGG GCATCGGTAT GGGCTATGCC ATCGGTGCTA GCGTGACTTC TGGTTCTCCG GTTGTCGCCA TTGAAGGTGA TAGTGCTTTT GGTTTCAGTG GGATGGAAAT TGAAACGATT TGTCGATATA ACCTGCCGGT GACGATCGTT ATTTTTAATA ATGGCGGCAT CTACAGAGGA GACGGTGTTG ATCTCAGTGG CGCTGGTGCA CCATCACCAA CGGATCTGTT GCACCATGCA AGGTATGACA AATTAATGGA TGCGTTTCGT GGCGTTGGCT ATAACGTCAC CACGAAAGAT GAACTTCGTC ATGCTTTAAC CACCGGTATT CAGTCGCGCA AACCGACCAT TATTAATGTG GTCATCGACC CTGCAGCAGG AACTGAAAGT GGCCATATTA CCAAACTTAA CCCAAAACAA GTCGCTGGTA ATTAA
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Protein sequence | MSDQLQMTDG MHIIVEALKQ NNIDTIYGVV GIPVTDMARH AQAEGIRYIG FRHEQSAGYA AAASGFLTQK PGICLTVSAP GFLNGLTALA NATVNGFPMI MISGSSDRAI VDLQQGDYEE LDQMNAAKPY AKAAFRVNQP QDLGIALARA IRVSVSGRPG GVYLDLPANV LAATMEKDEA LTTIVKVENP SPALLPCPKS VTSAISLLAK AERPLIILGK GAAYSQADEQ LREFIESAQI PFLPMSMAKG ILEDTHPLSA AAARSFALAN ADVVMLVGAR LNWLLAHGKK GWAADTQFIQ LDIEPQEIDS NRPIAVPVIG DIASSMQGML AELKQNTFTT PLVWRDILNI HKQQNAQKMH EKLSTDTQPL NYFNALSAVR DVLRENQDIY LVNEGANTLD NARNIIDMYK PRRRLDCGTW GVMGIGMGYA IGASVTSGSP VVAIEGDSAF GFSGMEIETI CRYNLPVTIV IFNNGGIYRG DGVDLSGAGA PSPTDLLHHA RYDKLMDAFR GVGYNVTTKD ELRHALTTGI QSRKPTIINV VIDPAAGTES GHITKLNPKQ VAGN
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