| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E2644 |
|---|
| Symbol | menF |
|---|
| ID | 6270944 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 2444440 |
|---|
| End bp | 2445735 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641726611 |
|---|
| Product | isochorismate synthase, menaquinone-specific |
|---|
| Protein accession | YP_001881091 |
|---|
| Protein GI | 187733268 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1169] Isochorismate synthase |
|---|
| TIGRFAM ID | [TIGR00543] isochorismate synthases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.181423 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAATCAC TTACTACGGC GCTGGAAAAT CTACTGCGCC ATTTGTCGCA AGAGATTCCG
GCGACACCCG GCATTCGGGT TATCGATATT CCTTTCCCTC TCAAAGACGC TTTTGATGCC
TTGAGCTGGC TGGCCAGTCA GCAAACGTAC CCGCAATTCT ACTGGCAACA ACGTAATGGT
GATGAAGAAG CTGCCGTCCT GGGCGCGATT ACCCGTTTTA CGTCGTTGGA CCAGGCACAA
CGTTTTCTTC GCCAGCACCC GGAACACGCC GACTTACGCA TTTGGGGGCT GAATGCTTTT
GACCCGTCGC AGGGCAATTT ACTTTTACCC CGCTTGGAAT GGCGACGCTG TGGCGGTAAA
GCCACGCTGC GGCTGACGCT ATTCAGCGAA AGCTCCCTTC AGCACGATGC GATTCAGGCA
AAAGAATTTA TCGCCACACT GGTGAGTATC AAGCCCTTGC CTGGGTTACA TTTAACCACC
ACGCGAGAAC AACACTGGCC GGACAAAACG GGCTGGACGC AATTAATCGA ACTGGCAACG
AAAACCATCG CCGAAGGTGA GCTCGACAAA GTGGTGCTCG CTCGGGCAAC TGACCTGCAT
TTCGCAAGTC CGGTCAACGC GGCGGCGATG ATGGCTGCCA GTCGTCGACT GAATCTGAAT
TGCTACCATT TTTACATGGC CTTTGATGGC GAAAATGCTT TTCTTGGCTC TTCACCGGAA
CGGTTATGGC GGCGGCGTGA CAAAGCGCTG CGTACTGAAG CGCTGGCGGG AACAGTAGCA
AATCATCCTG ATGATAAGCA GGCGCAGCAG TTAGAAGAGT GGCTGATGGC GGATGATAAA
AACCAGCGCG AGAACATGCT GGTGGTGGAA GATATCTGCC AACGATTACA GGCCGATACC
CAGACGCTGG ATGTTTTACC GCCGCAGGTA CTGCGTCTGC GTAAAGTGCA GCATCTTCGC
CGCTGTATCT GGACTTCACT CAACAAAGCG GATGATGTGA TCTGTTTACA TCAGTTGCAG
CCAACGGCAG CAGTTGCTGG CTTACCGCGC GATCTGGCGC GACAGTTTAT CGCCCGTCAC
GAACCGTTCA CCCGAGAATG GTACGCCGGT TCTGCGGGCT ATCTCTCATT ACAACAAAGC
GAATTCTGCG TTTCCCTGCG CTCAGCAAAA ATTAGCGGCA ATGTCGTGCG ATTATATGCT
GGCGCGGGCA TTGTCCGTGG TTCCGACCCC GAGCAAGAGT GGCAGGAAAT CGACAACAAA
GCGGCAGGGT TGCGTACTTT ATTACAAATG GAATAG
|
|---|
| Protein sequence | MQSLTTALEN LLRHLSQEIP ATPGIRVIDI PFPLKDAFDA LSWLASQQTY PQFYWQQRNG
DEEAAVLGAI TRFTSLDQAQ RFLRQHPEHA DLRIWGLNAF DPSQGNLLLP RLEWRRCGGK
ATLRLTLFSE SSLQHDAIQA KEFIATLVSI KPLPGLHLTT TREQHWPDKT GWTQLIELAT
KTIAEGELDK VVLARATDLH FASPVNAAAM MAASRRLNLN CYHFYMAFDG ENAFLGSSPE
RLWRRRDKAL RTEALAGTVA NHPDDKQAQQ LEEWLMADDK NQRENMLVVE DICQRLQADT
QTLDVLPPQV LRLRKVQHLR RCIWTSLNKA DDVICLHQLQ PTAAVAGLPR DLARQFIARH
EPFTREWYAG SAGYLSLQQS EFCVSLRSAK ISGNVVRLYA GAGIVRGSDP EQEWQEIDNK
AAGLRTLLQM E
|
|---|
| |