Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E2643 |
Symbol | menD |
ID | 6270431 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 2442681 |
End bp | 2444351 |
Gene Length | 1671 bp |
Protein Length | 556 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 641726610 |
Product | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase |
Protein accession | YP_001881090 |
Protein GI | 187730990 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.106011 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCAGTAA GCGCATTTAA CCGACGCTGG GCGGCGGTCA TTCTGGAAGC ATTAACGCGT CACGGCGTCA GACACATCTG TATCGCCCCA GGCTCGCGTT CTACACCGTT AACGTTAGCG GCGGCGGAGA ATTCCGCATT CATTCACCAC ACCCATTTCG ATGAGCGTGG GTTGGGGCAT CTGGCGCTGG GGCTGGCGAA AGTCAGCAAG CAGCCGGTGG CGGTGATTGT GACCTCCGGC ACGGCGGTGG CAAATCTCTA TCCGGCACTG ATTGAAGCCG GGTTAACCGG AGAAAAACTG ATTCTCTTAA CCGCCGATCG CCCGCCGGAG CTAATTGACT GCGGCGCGAA TCAGGCAATT CGCCAGCCGG GAATGTTCGC CTCTCACCCC ACGCACAGTA TTTCATTGCC GCGCCCGACC CAGGATATCC CCGCACGTTG GCTGGTTTCT ACCATCGACC ACGCTCTCGG TACGCTTCAT GCGGGGGGAG TCCATATCAA CTGCCCGTTT GCTGAACCGC TGTATGGCGA AATGGACGAT ACCGGGCTTA GCTGGCAACA GCGTCTGGGT GACTGGTGGC AGGACGACAA ACCGTGGCTG CGTGAAGCGC CTAGTCTGGA AAGTGAAAAA CAGCGCGACT GGTTCTTCTG GCGACAAAAG CGCGGCGTGG TGGTTGCCGG GCGCATGAGT GCGGAAGAGG GCAAAAAAGT TGCCCTGTGG GCGCAAACTC TTGGCTGGCC GCTGATTGGC GATGTGCTGT CACAAACCGG GCAGCCGCTG CCGTGTGCCG ATCTTTGGTT AGGCAATGCC AAAGCGACCA GCGAGCTGCA GCAGGCGCAA ATTGTGGTGC AACTGGGAAG CAGCCTGACG GGCAAACGGC TCCTGCAATG GCAGGCAAGC TGTGAACCCG AAGAGTACTG GATTGTGGAT GACATCGAAG GGCGGCTTGA TCCGGCGCAC CATCGTGGAC GCCGCTTAAT TGCCAATATT GCCGACTGGC TGGAGCTGCA TCCGGCAGAA AAACGCCAGC CCTGGTGCGT TGAAATCCCG CGCCTGGCGG AACAGGCAAT GCAGGCGGTT ATTGCCCGTC GCGATGCGTT TGGCGAAGCG CAACTGGCGC ATCGCATCAG CGACTATCTG CCTGAACAGG GGCAATTGTT TGTCGGTAAC AGCCTGGTGG TACGTCTGAT TGATGCGCTT TCGCAACTTC CGGCAGGTTA CCCGGTGTAC AGCAACCGAG GGGCCAGCGG TATCGACGGA CTGCTTTCGA CCGCCGCAGG CGTTCAGCGG GCAAGCGGCA AACCGACGCT GGCGATTGTG GGCGATCTCT CCGCACTTTA CGATCTCAAC GCGCTGGCGT TATTGCGTCA GGTTTCTGCG CCGCTGGTAT TAATTGTGGT GAACAACAAC GGCGGGCAAA TTTTCTCGCT GTTGCCAACG CCGCAAAGCG AGCGTGAGCG TTTCTATCTG ATGCCGCAAA ACGTCCATTT TGAGCACGCC GCCGCGATGT TCGAGCTGAA ATATCATCGT CCGCAAAACT GGCAGGAACT TGAAACGGCA TTTGCCGACG CCTGGCGCAC GCCAACCACC ACGGTGATTG AAATGGTGGT TAACGACACC GATGGTGCGC AAACGCTCCA GCAACTTCAG GCGCAGGTAA GCCATTTATG A
|
Protein sequence | MSVSAFNRRW AAVILEALTR HGVRHICIAP GSRSTPLTLA AAENSAFIHH THFDERGLGH LALGLAKVSK QPVAVIVTSG TAVANLYPAL IEAGLTGEKL ILLTADRPPE LIDCGANQAI RQPGMFASHP THSISLPRPT QDIPARWLVS TIDHALGTLH AGGVHINCPF AEPLYGEMDD TGLSWQQRLG DWWQDDKPWL REAPSLESEK QRDWFFWRQK RGVVVAGRMS AEEGKKVALW AQTLGWPLIG DVLSQTGQPL PCADLWLGNA KATSELQQAQ IVVQLGSSLT GKRLLQWQAS CEPEEYWIVD DIEGRLDPAH HRGRRLIANI ADWLELHPAE KRQPWCVEIP RLAEQAMQAV IARRDAFGEA QLAHRISDYL PEQGQLFVGN SLVVRLIDAL SQLPAGYPVY SNRGASGIDG LLSTAAGVQR ASGKPTLAIV GDLSALYDLN ALALLRQVSA PLVLIVVNNN GGQIFSLLPT PQSERERFYL MPQNVHFEHA AAMFELKYHR PQNWQELETA FADAWRTPTT TVIEMVVNDT DGAQTLQQLQ AQVSHL
|
| |