| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E2463 |
|---|
| Symbol | amiD |
|---|
| ID | 6268569 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 2268776 |
|---|
| End bp | 2269606 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641726455 |
|---|
| Product | N-acetylmuramoyl-L-alanine amidase AmiD |
|---|
| Protein accession | YP_001880936 |
|---|
| Protein GI | 187730786 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG3023] Negative regulator of beta-lactamase expression |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.302263 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAGAG TCTTCTGGCT GGTCGCTGCC GCTCTGTTAT TGGCAGGGTG TGCAGGCGAA
AAAGGCATTG TCGAGAAAGA GGGATATCAG CTTGATACCC GACGCCAGGC GCAGGCGGCG
TATCCGCGCA TTAAAGTGCT GGTGATCCAC TACACCGCAG ATGATTTTGA TAGCTCGCTG
GCGACACTGA CCGATAAGCA GGTCAGCTCG CATTATCTGG TCCCTGCGGT ACCACCGCGA
TACAACGGTA AACCGCGCAT CTGGCAACTG GTGCCGGAAC AAGAACTGGC CTGGCATGCG
GGGATTAGCG CCTGGCGCGG GGCAACGCGC CTTAACGACA CCTCTATTGG CATTGAGCTG
GAAAACCGTG GCTGGCAAAA ATCGGCCGGA GTGAAATATT TTGCCCCGTT TGAACCGGCA
CAGATTCAGG CGCTTATTCC ACTGGCGAAA GATATTATTG CCCGTTATCA CATCAAGCCG
GAAAACGTAG TGGCACATGC GGATATCGCA CCGCAGCGCA AAGACGATCC GGGGCCATTA
TTTCCCTGGC AGCAACTGGC GCAGCAGGGG ATTGGTGCCT GGCCGGATGC GCAGCGGGTT
AACTTTTACC TTGCCGGGCG CGCGCCGCAC ACACCGGTAG ATACCGCGTC ATTGCTGGAG
CTTTTGGCGC GCTACGGTTA TGACGTTAAA CCTGATATGA CACCGCGCGA GCAGCGGCGC
GTGATTATGG CATTCCAGAT GCATTTCCGC CCGACGTTAT ATAACGGCGA AGCGGATGCA
GAAACTCAGG CGATTGCCGA AGCATTGCTG GAGAAATACG GGCAGGATTA G
|
|---|
| Protein sequence | MRRVFWLVAA ALLLAGCAGE KGIVEKEGYQ LDTRRQAQAA YPRIKVLVIH YTADDFDSSL
ATLTDKQVSS HYLVPAVPPR YNGKPRIWQL VPEQELAWHA GISAWRGATR LNDTSIGIEL
ENRGWQKSAG VKYFAPFEPA QIQALIPLAK DIIARYHIKP ENVVAHADIA PQRKDDPGPL
FPWQQLAQQG IGAWPDAQRV NFYLAGRAPH TPVDTASLLE LLARYGYDVK PDMTPREQRR
VIMAFQMHFR PTLYNGEADA ETQAIAEALL EKYGQD
|
|---|
| |