Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E2449 |
Symbol | cspD |
ID | 6272152 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 2251153 |
End bp | 2251377 |
Gene Length | 225 bp |
Protein Length | 74 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641726441 |
Product | stationary phase/starvation inducible regulatory protein CspD |
Protein accession | YP_001880922 |
Protein GI | 187731789 |
COG category | [K] Transcription |
COG ID | [COG1278] Cold shock proteins |
TIGRFAM ID | [TIGR02381] cold shock domain protein CspD |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.0782347 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAAGG GTACTGTTAA GTGGTTCAAC AATGCCAAAG GGTTTGGTTT CATCTGCCCT GAAGGCGGCG GCGAAGATAT TTTCGCTCAT TATTCCACCA TTCAGATGGA TGGTTACAGA ACGCTAAAAG CTGGACAATC CGTTCAGTTT GATGTCCACC AGGGGCCAAA AGGCAATCAC GCCAGTGTTA TTGTGCCCGT CGAAGTAGAA GCGGCAGTCG CATAG
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Protein sequence | MEKGTVKWFN NAKGFGFICP EGGGEDIFAH YSTIQMDGYR TLKAGQSVQF DVHQGPKGNH ASVIVPVEVE AAVA
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