| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E2377 |
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| Symbol | |
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| ID | 6271077 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | - |
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| Start bp | 2167477 |
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| End bp | 2170077 |
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| Gene Length | 2601 bp |
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| Protein Length | 866 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641726380 |
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| Product | outer membrane usher protein fimD homolog |
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| Protein accession | YP_001880862 |
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| Protein GI | 187731051 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.108506 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATAGAA CTCATCGACA ACACAGCCTG TTAAGCTCTG GTGGAGTGCC ATCGTTTATT
GGGGGGCTGG TGGTGTTTGT GTCGGCAGCG TTCAATGCAC AAGCTGAAAC CTGGTTCGAT
CCTGCTTTTT TCAAAGATGA TCCCTCAATG GTGGCCGATT TGTCTCGTTT CGAAAAAGGA
CAAAAAATAA CGCCAGGGGT TTATCGTGTC GATATTGTTC TGAATCAGAC AATTGTAGAT
ACGCGCAACG TCAATTTTGT TGAGATAACG CCAGAGAAGG GGATTGCCGC CTGTTTGACG
ACTGAAAGCC TGGATGCAAT GGGTGTTAAT ACTGATGCGT TTCCGGCTTT TAAACAACTG
GACAAACAAG CGTGTGTGCC ATTGGCGGAG ATTATTCCGG ATGCCAGCGT AACGTTTAAT
GTGAATAAAC TCCGTCTGGA AATTTCAGTA CCGCAAATCG CCATCAAAAG TAATGCCCGT
GGTTATGTCC CCCCTGAACG TTGGGATGAA GGGATCAACG CGCTATTACT GGGATATTCG
TTTAGCGGGG CTAACAGTAT TCATAGCAGC GCAGACAGTG ATTCTGGCGA CAGCTATTTT
CTGAATTTAA ACAGTGGCGT TAATTTAGGC CCATGGAGAT TGCGCAACAA TTCAACATGG
AGTCGCAGTA GTGGCCAAAC CGCAGAATGG AAGAATCTCA GCAGCTATTT GCAGCGGGCG
GTTATTCCAC TAAAAGGCGA ACTGACCGTA GGTGATGATT ATACTGCAGG CGATTTTTTC
GATAGTGTCA GCTTTCGTGG TGTGCAGCTG GCGTCAGATG ACAACATGCT GCCAGACAGC
CTGAAAGGGT TTGCGCCTGT GGTGCGTGGT ATCGCCAAAA GCAATGCCCA GATAACGATT
AAGCAAAATG GTTACACCAT TTACCAAACT TATGTATCGC CTGGTGCTTT TGAAATTAGT
GATCTCTATT CCACGTCGTC GAGCGGTGAT TTGTTAGTTG AAATCAAAGA AGCGGACGGC
AGCGTCAATA GCTACAGCGT ACCGTTTTCC AGCGTGCCAT TACTCCAGCG TCAGGGGCGA
ATCAAATACG CGGTGACACT GGCGAAATAC AGAACCAATA GTAATGAACA GCAGGAGAGC
AAATTTGCCC AGGCCACGTT GCAGTGGGGC GGACCGTGGG GAACGACATG GTATGGTGGT
GGACAATATG CTGAATATTA CCGTGCCGCC ATGTTTGGTC TGGGATTTAA CCTTGGCGAT
TTCGGAGCAA TTTCGTTCGA TGCGACCCAG GCGAAGAGTA CGCTGGCAGA CCAAAGCGAA
CATAAAGGTC AGTCATATCG TTTTCTGTAT GCCAAAACGC TCAACCAATT GGGCACTAAT
TTTCAACTGA TGGGCTATCG CTATTCGACG TCGGGTTTCT ACACCCTTTC CGACACCATG
TATAAACATA TGGATGGCTA CGAATTTAAT GACGGTGATG ATGAAGATAC GCCGATGTGG
TCGCGTTATT ACAATTTGTT TTACACCAAA CGTGGCAAAC TGCAGGTCAA TATCTCCCAG
CAATTAGGCG ATTACGGTTC GTTTTATTTA AGTGGTAGCC AGCAAACTTA CTGGCATACC
GATCAACAGG ATCGGCTATT ACAGTTTGGC TACAACACGC AAATTAAAGA TCTCTCGCTG
GGGGTTTCCT GGAACTACAG TAAGTCCCGT GGTCAACCTG ATGCTGATCA GGTGTTTGCA
CTAAATTTTT CCCTGCCGCT CAATCTGTTG CTCCCCAGAA GTAATGATAG CTATACCAGG
AAAAAAAATT ACGCCTGGAT GACCTCTAAC ACCAGTATCG ATAACGAAGG GCACATTACA
CAAAACCTGG GTTTAACGGA GACACTACTC GATGACGGTA ACCTGAGCTA CAGCGTGCAA
CAGGGATATA ACAGCGAGGG GAAAACGGCT AATGGTAGCG CCAGCATGGA CTACAAAGGG
GCGTTTGCAG ATGCCCGAGT GGGCTACAAC TACAGCGATA ACGGCAGTCA ACAACAACTG
AACTACGCTC TTTCAGGCAG TTTAGTTGCC CATTCACAGG GCATTACCCT GGGGCAATCG
CTGGGGGAAA CTAACGTGCT GATTGCAGCA CCAAGCGCAG AGAATACTCG TGTGGCGAAC
AGCACCGGGC TGAAAACTGA CTGGCGCGGA TATACCGTTG TCCCCTATGC CACTTCTTAT
CGGGAAAATC GAATCGCACT TGATGCGGCA TCGTTAAAAC GTAACGTGGA TCTTGAAAAT
GCAGTAGTCA ACGTGGTTCC CACCAAAGGG GCGTTGGTTC TGGCGGAGTT CAATGCCCAT
GCGGGAGCAA GGGTATTAAT GAAAACATCA AAGCAGGGTA TACCGCTGCG TTTTGGCGCG
ATAGCGACGC TGGACGGCAT ACAGACTAAT AGCGGCATTA TTGATGATGA TGGCTCGCTC
TATATGTCCG GTTTGCCCGC TCAGGGAGCG ATAACTGTAC GCTGGGGCGA AGCTCCCGAT
CAAATTTGTC ATATCAGTTA CCAGCTTACC GAACAACAAA TTAACTCTGC GATTACGCGA
ATGGATGCCA TATGCAGATA A
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| Protein sequence | MYRTHRQHSL LSSGGVPSFI GGLVVFVSAA FNAQAETWFD PAFFKDDPSM VADLSRFEKG
QKITPGVYRV DIVLNQTIVD TRNVNFVEIT PEKGIAACLT TESLDAMGVN TDAFPAFKQL
DKQACVPLAE IIPDASVTFN VNKLRLEISV PQIAIKSNAR GYVPPERWDE GINALLLGYS
FSGANSIHSS ADSDSGDSYF LNLNSGVNLG PWRLRNNSTW SRSSGQTAEW KNLSSYLQRA
VIPLKGELTV GDDYTAGDFF DSVSFRGVQL ASDDNMLPDS LKGFAPVVRG IAKSNAQITI
KQNGYTIYQT YVSPGAFEIS DLYSTSSSGD LLVEIKEADG SVNSYSVPFS SVPLLQRQGR
IKYAVTLAKY RTNSNEQQES KFAQATLQWG GPWGTTWYGG GQYAEYYRAA MFGLGFNLGD
FGAISFDATQ AKSTLADQSE HKGQSYRFLY AKTLNQLGTN FQLMGYRYST SGFYTLSDTM
YKHMDGYEFN DGDDEDTPMW SRYYNLFYTK RGKLQVNISQ QLGDYGSFYL SGSQQTYWHT
DQQDRLLQFG YNTQIKDLSL GVSWNYSKSR GQPDADQVFA LNFSLPLNLL LPRSNDSYTR
KKNYAWMTSN TSIDNEGHIT QNLGLTETLL DDGNLSYSVQ QGYNSEGKTA NGSASMDYKG
AFADARVGYN YSDNGSQQQL NYALSGSLVA HSQGITLGQS LGETNVLIAA PSAENTRVAN
STGLKTDWRG YTVVPYATSY RENRIALDAA SLKRNVDLEN AVVNVVPTKG ALVLAEFNAH
AGARVLMKTS KQGIPLRFGA IATLDGIQTN SGIIDDDGSL YMSGLPAQGA ITVRWGEAPD
QICHISYQLT EQQINSAITR MDAICR
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