| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E2374 |
|---|
| Symbol | |
|---|
| ID | 6273032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 2165339 |
|---|
| End bp | 2165854 |
|---|
| Gene Length | 516 bp |
|---|
| Protein Length | 171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641726377 |
|---|
| Product | fimbrial protein |
|---|
| Protein accession | YP_001880859 |
|---|
| Protein GI | 187730523 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.000000854924 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAAC GGATAATCTG GATTCTGTTC TTACTGGGAT TAACGGGGGG CTGTGAGCTA
TTTGCCCATG ATGGCACGGT CAACATTAGC GGATCGTTTC GCCGTAATAC ATGCGTGCTG
GCACAGGATA GCAAGCAAAT CAATGTGCAG TTAGGCGATG TCTCGCTGAC ACGTTTTTTT
CATGGGAATT ATGGCCCGGA GAAATCTTTC ATCATTAATT TGCAGGATTG CGGAACAGAT
GTCAGCACGG TTGACGTCAC CTTTTCAGGA ACCCCCGACG GAGTGCAGAG CGAAATGCTG
TCCATTGAAA GTGGTACGGA TGCAGCCAGT GGGCTGGCAA TTGCGATTCT GGATGATGCG
AAGATATTGA TTCCGCTTAA CCAGGCGAGT AAAGACTACA GCCTACATAG CGGTAAGGTG
CCATTAACTT TTTATGCGCA ATTGCGACCT GTCAATAGCG ATGTGCAGTC GGGTAAAGTG
AATGCCAGCG CGACATTTGT ACTTCATTAT GACTAA
|
|---|
| Protein sequence | MLKRIIWILF LLGLTGGCEL FAHDGTVNIS GSFRRNTCVL AQDSKQINVQ LGDVSLTRFF
HGNYGPEKSF IINLQDCGTD VSTVDVTFSG TPDGVQSEML SIESGTDAAS GLAIAILDDA
KILIPLNQAS KDYSLHSGKV PLTFYAQLRP VNSDVQSGKV NASATFVLHY D
|
|---|
| |