Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E2353 |
Symbol | helD |
ID | 6270882 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 2139805 |
End bp | 2141859 |
Gene Length | 2055 bp |
Protein Length | 684 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641726357 |
Product | DNA helicase IV |
Protein accession | YP_001880839 |
Protein GI | 187731377 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0210] Superfamily I DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.757014 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACTGA AAGCGACAAC GCTTGGAAAA CGTCTGGCAC AGCACCCTTA CGATCGGGCG GTGATCCTCA ATGCCGGGAT TAAAGTCTCC GGCGATCGCC ACGAATACCT TATTCCTTTC AATCAATTAC TGGCGATTCA CTGTAAGCGT GGTCTGGTAT GGGGCGAGCT GGAATTTGTA CTGCCGGACG AAAAAGTGGT GCGTCTGCAC GGCACCGAAT GGGGCGAGAC GCAGCGTTTT TACCATCATC TTGATGCTCA CTGGCGGCGG TGGAGTGGCG AGATGAGCGA AATTGCGTCT GGTGTTTTAC GCCAGCAACT GGATTTGATT GCCACGCGCA CTGGAGAAAA TAAATGGCTG ACGCGTGAGC AAACCTCTGG CGTTCAGCAA CAAATCCGCC AGGCTTTGTC GGCGTTGCCG TTGCCGGTTA ACCGACTGGA AGAATTCGAT AACTGCCGTG AGGCGTGGCG TAAATGTCAG GCCTGGTTGA AAGATATTGA AAGCGCTCGG TTGCAGCATA ACCAGGCGTA TACCGAAGCC ATGCTTACCG AGTATGCGGA TTTTTTCCGC CAGGTCGAGT CTTCACCGCT GAATCCGGCG CAGGCCCGGG CAGTCGTTAA TGGCGAGCAT TCTCTGTTAG TGCTGGCAGG TGCAGGAAGC GGAAAAACGT CGGTGCTGGT GGCCCGTGCA GGCTGGTTGC TGGCACGTGG TGAAGCGTCC CCTGAGCAAA TTTTATTGCT GGCGTTTGGT CGCAAAGCCG CTGAAGAGAT GGACGAGCGG ATTCGCGAAC GGCTACATAC CGAAGACATT ACCGCACGCA CGTTTCATGC GCTGGCGCTG CATATTATTC AGCAGGGCAG CAAAAAAGTT CCGATAGTCA GCAAACTGGA AAATGATACC GCTGCCCGTC ATGAACTCTT TATTGCTGAG TGGCGCAAGC AATGCAGCGA AAAGAAAGCG CAGGCGAAGG GCTGGCGGCA ATGGCTGACG GAAGAAATGC AGTGGTCAGT GCCAGAAGGT AACTTCTGGG ATGATGAAAA ATTACAGCGT CGCCTTGCCT CTCGCCTCGA TCGCTGGGTA AGTCTGATGC GGATGCACGG TGGTGCACAG GCAGAAATGA TTGCCAGTGC ACCCGAAGAG ATTCGCGATC TGTTCAGTAA ACGTATCAAG TTGATGGCCC CGTTATTAAA AGCCTGGAAA GGTGCGCTGA AGGCAGAAAA CGCTGTCGAT TTTTCGGGCC TTATTCATCA GGCGATTGTG ATTCTGGAGA AAGGTCGCTT TATCAGCCCG TGGAAGCATA TTCTGGTTGA TGAATTTCAG GATATCTCGC CGCAGCGGGC AGCGTTGTTA GCGGCATTAC GCAAGCAAAA CAGTCAGACG ACGTTGTTCG CTGTTGGTGA TGACTGGCAG GCGATTTACC GATTCAGCGG TGCGCAAATG TCGCTCACCA CCGCTTTCCA TGAAAACTTT GGTGAAGGCG AACGTTGTGA TTTAGACACG ACTTACCGTT TTAACAGTCG TATCGGTAAG GTGGCAAACC GTTTTATTCA GCAGAACCCA GGCCAGCTGA AAAAGCCGCT AAACAGCTTA ACCAATGGAG ACAAAAAAGC CGTCACGTTA TTGGATGAGA GTCAACTTGA CGCTTTGCTG GATAAGCTCT CTGGTTATGC CAAACCGGAA GAGCGCATTC TGATCCTGGC GCGTTACCAT CACATGAGGC CTGCCAGCCT GGAAAAAGCG GCAACACGCT GGCCGAAGTT GCAAATCGAC TTTATGACCA TTCATGCCAG CAAAGGGCAA CAGGCTGATT ACGTCATCAT CGTTGGCTTG CAGGAGGGAA GTGATGGTTT TCCGGCTGCG GCGCGGGAGT CGATTATGGA AGAGGCGCTA CTGCCACCGG TTGAGGATTT CCCGGACGCT GAAGAACGGC GGTTAATGTA CGTGGCGCTG ACCCGGGCAC GCCATCGGGT ATGGGCACTG TTTAACAAAG AGAATCCCTC TCCCTTTGTT GAAATACTGA AAAATCTGGA TGTGCCGGTG GCGAGAAAAC CGTAA
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Protein sequence | MELKATTLGK RLAQHPYDRA VILNAGIKVS GDRHEYLIPF NQLLAIHCKR GLVWGELEFV LPDEKVVRLH GTEWGETQRF YHHLDAHWRR WSGEMSEIAS GVLRQQLDLI ATRTGENKWL TREQTSGVQQ QIRQALSALP LPVNRLEEFD NCREAWRKCQ AWLKDIESAR LQHNQAYTEA MLTEYADFFR QVESSPLNPA QARAVVNGEH SLLVLAGAGS GKTSVLVARA GWLLARGEAS PEQILLLAFG RKAAEEMDER IRERLHTEDI TARTFHALAL HIIQQGSKKV PIVSKLENDT AARHELFIAE WRKQCSEKKA QAKGWRQWLT EEMQWSVPEG NFWDDEKLQR RLASRLDRWV SLMRMHGGAQ AEMIASAPEE IRDLFSKRIK LMAPLLKAWK GALKAENAVD FSGLIHQAIV ILEKGRFISP WKHILVDEFQ DISPQRAALL AALRKQNSQT TLFAVGDDWQ AIYRFSGAQM SLTTAFHENF GEGERCDLDT TYRFNSRIGK VANRFIQQNP GQLKKPLNSL TNGDKKAVTL LDESQLDALL DKLSGYAKPE ERILILARYH HMRPASLEKA ATRWPKLQID FMTIHASKGQ QADYVIIVGL QEGSDGFPAA ARESIMEEAL LPPVEDFPDA EERRLMYVAL TRARHRVWAL FNKENPSPFV EILKNLDVPV ARKP
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