Gene SbBS512_E2353 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E2353 
SymbolhelD 
ID6270882 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp2139805 
End bp2141859 
Gene Length2055 bp 
Protein Length684 aa 
Translation table11 
GC content53% 
IMG OID641726357 
ProductDNA helicase IV 
Protein accessionYP_001880839 
Protein GI187731377 
COG category[L] Replication, recombination and repair 
COG ID[COG0210] Superfamily I DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.757014 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACTGA AAGCGACAAC GCTTGGAAAA CGTCTGGCAC AGCACCCTTA CGATCGGGCG 
GTGATCCTCA ATGCCGGGAT TAAAGTCTCC GGCGATCGCC ACGAATACCT TATTCCTTTC
AATCAATTAC TGGCGATTCA CTGTAAGCGT GGTCTGGTAT GGGGCGAGCT GGAATTTGTA
CTGCCGGACG AAAAAGTGGT GCGTCTGCAC GGCACCGAAT GGGGCGAGAC GCAGCGTTTT
TACCATCATC TTGATGCTCA CTGGCGGCGG TGGAGTGGCG AGATGAGCGA AATTGCGTCT
GGTGTTTTAC GCCAGCAACT GGATTTGATT GCCACGCGCA CTGGAGAAAA TAAATGGCTG
ACGCGTGAGC AAACCTCTGG CGTTCAGCAA CAAATCCGCC AGGCTTTGTC GGCGTTGCCG
TTGCCGGTTA ACCGACTGGA AGAATTCGAT AACTGCCGTG AGGCGTGGCG TAAATGTCAG
GCCTGGTTGA AAGATATTGA AAGCGCTCGG TTGCAGCATA ACCAGGCGTA TACCGAAGCC
ATGCTTACCG AGTATGCGGA TTTTTTCCGC CAGGTCGAGT CTTCACCGCT GAATCCGGCG
CAGGCCCGGG CAGTCGTTAA TGGCGAGCAT TCTCTGTTAG TGCTGGCAGG TGCAGGAAGC
GGAAAAACGT CGGTGCTGGT GGCCCGTGCA GGCTGGTTGC TGGCACGTGG TGAAGCGTCC
CCTGAGCAAA TTTTATTGCT GGCGTTTGGT CGCAAAGCCG CTGAAGAGAT GGACGAGCGG
ATTCGCGAAC GGCTACATAC CGAAGACATT ACCGCACGCA CGTTTCATGC GCTGGCGCTG
CATATTATTC AGCAGGGCAG CAAAAAAGTT CCGATAGTCA GCAAACTGGA AAATGATACC
GCTGCCCGTC ATGAACTCTT TATTGCTGAG TGGCGCAAGC AATGCAGCGA AAAGAAAGCG
CAGGCGAAGG GCTGGCGGCA ATGGCTGACG GAAGAAATGC AGTGGTCAGT GCCAGAAGGT
AACTTCTGGG ATGATGAAAA ATTACAGCGT CGCCTTGCCT CTCGCCTCGA TCGCTGGGTA
AGTCTGATGC GGATGCACGG TGGTGCACAG GCAGAAATGA TTGCCAGTGC ACCCGAAGAG
ATTCGCGATC TGTTCAGTAA ACGTATCAAG TTGATGGCCC CGTTATTAAA AGCCTGGAAA
GGTGCGCTGA AGGCAGAAAA CGCTGTCGAT TTTTCGGGCC TTATTCATCA GGCGATTGTG
ATTCTGGAGA AAGGTCGCTT TATCAGCCCG TGGAAGCATA TTCTGGTTGA TGAATTTCAG
GATATCTCGC CGCAGCGGGC AGCGTTGTTA GCGGCATTAC GCAAGCAAAA CAGTCAGACG
ACGTTGTTCG CTGTTGGTGA TGACTGGCAG GCGATTTACC GATTCAGCGG TGCGCAAATG
TCGCTCACCA CCGCTTTCCA TGAAAACTTT GGTGAAGGCG AACGTTGTGA TTTAGACACG
ACTTACCGTT TTAACAGTCG TATCGGTAAG GTGGCAAACC GTTTTATTCA GCAGAACCCA
GGCCAGCTGA AAAAGCCGCT AAACAGCTTA ACCAATGGAG ACAAAAAAGC CGTCACGTTA
TTGGATGAGA GTCAACTTGA CGCTTTGCTG GATAAGCTCT CTGGTTATGC CAAACCGGAA
GAGCGCATTC TGATCCTGGC GCGTTACCAT CACATGAGGC CTGCCAGCCT GGAAAAAGCG
GCAACACGCT GGCCGAAGTT GCAAATCGAC TTTATGACCA TTCATGCCAG CAAAGGGCAA
CAGGCTGATT ACGTCATCAT CGTTGGCTTG CAGGAGGGAA GTGATGGTTT TCCGGCTGCG
GCGCGGGAGT CGATTATGGA AGAGGCGCTA CTGCCACCGG TTGAGGATTT CCCGGACGCT
GAAGAACGGC GGTTAATGTA CGTGGCGCTG ACCCGGGCAC GCCATCGGGT ATGGGCACTG
TTTAACAAAG AGAATCCCTC TCCCTTTGTT GAAATACTGA AAAATCTGGA TGTGCCGGTG
GCGAGAAAAC CGTAA
 
Protein sequence
MELKATTLGK RLAQHPYDRA VILNAGIKVS GDRHEYLIPF NQLLAIHCKR GLVWGELEFV 
LPDEKVVRLH GTEWGETQRF YHHLDAHWRR WSGEMSEIAS GVLRQQLDLI ATRTGENKWL
TREQTSGVQQ QIRQALSALP LPVNRLEEFD NCREAWRKCQ AWLKDIESAR LQHNQAYTEA
MLTEYADFFR QVESSPLNPA QARAVVNGEH SLLVLAGAGS GKTSVLVARA GWLLARGEAS
PEQILLLAFG RKAAEEMDER IRERLHTEDI TARTFHALAL HIIQQGSKKV PIVSKLENDT
AARHELFIAE WRKQCSEKKA QAKGWRQWLT EEMQWSVPEG NFWDDEKLQR RLASRLDRWV
SLMRMHGGAQ AEMIASAPEE IRDLFSKRIK LMAPLLKAWK GALKAENAVD FSGLIHQAIV
ILEKGRFISP WKHILVDEFQ DISPQRAALL AALRKQNSQT TLFAVGDDWQ AIYRFSGAQM
SLTTAFHENF GEGERCDLDT TYRFNSRIGK VANRFIQQNP GQLKKPLNSL TNGDKKAVTL
LDESQLDALL DKLSGYAKPE ERILILARYH HMRPASLEKA ATRWPKLQID FMTIHASKGQ
QADYVIIVGL QEGSDGFPAA ARESIMEEAL LPPVEDFPDA EERRLMYVAL TRARHRVWAL
FNKENPSPFV EILKNLDVPV ARKP