Gene SbBS512_E2331 details

Gene Information

• Locus tag: SbBS512_E2331
• Symbol: ymcA
• ID: 6271233
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: +
• Start bp: 2118385
• End bp: 2120481
• Gene Length: 2097 bp
• Protein Length: 698 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 641726335
• Product: group 4 capsule (G4C) polysaccharide, lipoprotein YmcA
• Protein accession: YP_001880818
• Protein GI: 187732989

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.0175694
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAAGA ATTCTTATCT TTTAAGCTGC CTGGCCATTG CCGTCTCCAG TGCCTGTCAT 
GCTGAAGTAT TAACCTACCC GGATCCGCTG GGTTCGTCGC AATCAGACTT TGGCGGCACA 
GGATTGTTGC AGATGCCAAA TGCGCGCATC GCACCGGAAG GTGAATTCAG CGTCAACTAC 
CGGGATAACG ATCAATACCG GTTCTACTCC ACCTCCGTGG CGCTGTTCCC ATGGCTGGAA 
GGCACCATTC GTTATACGGA TGTGCGCACA CGCAAATATA GCCAGTGGGA AGATTTCAGC 
GGCGATCAGT CATACAAAGA CAAATCATTC GATTTTAAAC TTCGCCTGTG GGAAGAAGGT 
TACTGGCTAC CGCAAGTGGC GTTTGGTAAA CGTGATATTG CTGGTACGGG TCTGTTTGAC 
GGTGAGTATC TGGTGGCCAG CAAGCAAGCG GGGCCATTTG ATTTCACCCT CGGGATGGCA 
TGGGGCTACG CCGGTAATGC GGGCAATATT ACCAACCCGT TTTGCCGGGT GAGCGATAAA 
TATTGTCATC GCGCAGAGTC TCACGATGCG GGCGATATCA GCTTTAGCGA TATCTTTCGT 
GGCCCGGCTT CCATCTTTGG CGGCATTGAG TATCAAACGC CGTGGAATCC CCTGCGTCTG 
AAACTCGAAT ACGATGGCAA CAATTACCAG AATGATTTCG CTGGCAAACT GCCTCAGGCA 
AGCCATTTCA ACGTCGGCGC AGTTTATCGC GCTGCCAGCT GGGCAGATCT CAACCTGAGT 
TATGAACGCG GTAACACGTT GATGTTTGGC TTCACGTTAC GGACCAATTT CAACGATCTG 
CGCCCTGCCC TGCGCGATAC GCCAAAACCG GCATATCAAC CTGCGCCTGA ATCTGAAGGA 
TTGCAGTACA CCACAGTAGC GAACCAACTT ACCGCGCTGA AGTACAACGC AGGTTTTGAA 
GCACCGGAAA TTCAGCTGCG CGATAAGACG CTGTATATGT CTGGTCAACA ATACAAATAC 
CGTGATTCTC GCGAAGCGGT CGATCGTGCC AACCGGATTC TGGTGAATAA CCTGCCGCAA 
GGCGTTGAGA AGATTAGCGT GACGCAAAAG CGCGAGCATA TGGCGATGGT GACTACCGAA 
ACCGACGTAG CCAGCCTGCG CAAACAGCTG GCTGGTACAG CGCCTGGTCA ATCAGAGCAA 
CTTCAACAAC AACGTGTTGA AGCAGAAGAT CTTTCTGCCT TTGGTCGGGG CTACCGTATT 
CGTGAAGATC GCTTTAGCTA CTCTTTCAAC CCAACACTTT CACAGTCGCT GGGCGGCCCG 
GAAGATTTCT ATATGTTCCA GCTGGGGCTG ATGCCCAGTG CCCGCTACTG GTTTACCGAC 
CACCTGCTGC TTGATGGCGG TATTTTCACC AATATTTACA ACAACTACGA CAAGTTTAAG 
TCTTCGCTGT TGCCCGCGGA CTCTACCCTG CCCCGCGTGC GCACGCATAT CCGTGATTAC 
GTTCGCAATG ACGTTTATCT CAACAACTTG CAGGCGAACT ACTTTGCCGA CTTAGGCAAT 
GGTTTCTATG GCCAGGTGTA TGGCGGTTAT CTGGAAACGA TGTACGCCGG TGTCGGTTCC 
GAGCTGCTTT ATCGCCCGCT AGATGCCAGC TGGGCGCTGG GTGTGGACGT TAACTACGTG 
AAGCAACGTG ACTGGGACAA CATGATGCGC TTCACCGATT ATTCCACGCC AACTGGTTTC 
GTGACGGCTT ACTGGAACCC GCCGACGCTC AATGGCGTAC TGATGAAACT TAGCGTTGGG 
CAATATCTGG CAAAAGATAA AGGCGCAACG ATCGACGTCG CCAAACGCTT TGACAGCGGC 
GTGGCGGTAG GGGTATGGGC GGCAATCAGT AACGTATCTA AAGATGACTA CGGCGAAGGC 
GGCTTTAGTA AAGGTTTTTA TATCTCGATT CCATTCGACT TGATGACCAT TGGACCTAAC 
CGCAACCGCG CGGTGGTTTC GTGGACACCA TTGACGCGTG ATGGTGGACA AATGCTGTCA 
CGCAAATACC AGCTCTATCC AATGACGGCA GAGCGAGAAG TACCGGTTGG ACAATAA 

 

Protein sequence

MKKNSYLLSC LAIAVSSACH AEVLTYPDPL GSSQSDFGGT GLLQMPNARI APEGEFSVNY 
RDNDQYRFYS TSVALFPWLE GTIRYTDVRT RKYSQWEDFS GDQSYKDKSF DFKLRLWEEG 
YWLPQVAFGK RDIAGTGLFD GEYLVASKQA GPFDFTLGMA WGYAGNAGNI TNPFCRVSDK 
YCHRAESHDA GDISFSDIFR GPASIFGGIE YQTPWNPLRL KLEYDGNNYQ NDFAGKLPQA 
SHFNVGAVYR AASWADLNLS YERGNTLMFG FTLRTNFNDL RPALRDTPKP AYQPAPESEG 
LQYTTVANQL TALKYNAGFE APEIQLRDKT LYMSGQQYKY RDSREAVDRA NRILVNNLPQ 
GVEKISVTQK REHMAMVTTE TDVASLRKQL AGTAPGQSEQ LQQQRVEAED LSAFGRGYRI 
REDRFSYSFN PTLSQSLGGP EDFYMFQLGL MPSARYWFTD HLLLDGGIFT NIYNNYDKFK 
SSLLPADSTL PRVRTHIRDY VRNDVYLNNL QANYFADLGN GFYGQVYGGY LETMYAGVGS 
ELLYRPLDAS WALGVDVNYV KQRDWDNMMR FTDYSTPTGF VTAYWNPPTL NGVLMKLSVG 
QYLAKDKGAT IDVAKRFDSG VAVGVWAAIS NVSKDDYGEG GFSKGFYISI PFDLMTIGPN 
RNRAVVSWTP LTRDGGQMLS RKYQLYPMTA EREVPVGQ