| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E2304 |
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| Symbol | putA |
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| ID | 6269647 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | + |
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| Start bp | 2092332 |
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| End bp | 2096294 |
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| Gene Length | 3963 bp |
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| Protein Length | 1320 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641726316 |
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| Product | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
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| Protein accession | YP_001880799 |
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| Protein GI | 187732367 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
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| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGAACCA CCACCATGGG GGTTAAGCTG GACGACGCGA CGCGTGAGCG TATTAAGTCT
GCCGCGACAC GTATCGATCG CACGCCACAC TGGTTAATTA AGCAGGCGAT TTTTTCTTAT
CTCGAACAAC TGGAAAACAG CGATACTCTG CCAGAGCTAC CTGCGCTGCT TTCTGGTGCT
GCCAATGAGA GCGATGAAGC ACCGACTCCG GCAGAGGAAC CACACCAGCC ATTCCTCGAC
TTTGCCGAGC AAATTTTGCC CCAGTCGGTT TCCCGCGCCG CGATCACCGC GGCCTATCGT
CGCCCGGAAA CCGAAGCGGT TTCTATGCTG CTGGAACAAG CCCGCCTGCC GCAGCCAGTT
GCTGAACAGG CGCATAAACT GGCATATCAA CTGGCCGATA AACTGCGTAA TCAAAAAAAT
GCCAGTGGTC GCGCAGGTAT GGTCCAGGGG TTATTGCAGG AGTTTTCGCT GTCATCGCAG
GAAGGCGTGG CGCTGATGTG TCTGGCGGAA GCGTTGTTGC GTATTCCCGA CAAAGCCACC
CGCGACGCGT TAATTCGCGA CAAAATCAGC AACGGTAACT GGCAGTCACA CATTGGTCGT
AGCCCGTCAC TGTTTGTTAA TGCCGCTACC TGGGGGCTGT TGTTTACTGG CAAACTGGTT
TCCACCCATA ACGAAGCCAG CCTCTCCCGC TCGCTGAACC GCATTATCGG TAAAAGCGGT
GAACCGCTGA TCCGCAAAGG TGTGGATATG GCGATGCGCC TGATGGGCGA GCAGTTCGTC
ACGGGTGAAA CCATCGCGGA AGCGTTAGTC AATGCCCGCA AGCTGGAAGA GAAAGGTTTC
CGTTACTCTT ACGATATGCT GGGCGAAGCT GCACTGACTG CCGCAGACGC ACAGGCGTAT
ATGGTTTCCT ATCAGCAGGC GATTCACGCC ATTGGTAAAG CGTCTAACGG TCGTGGCATC
TATGAAGGTC CGGGCATTTC AATCAAGCTG TCGGCGCTGC ATCCGCGCTA CAGCCGCGCC
CAGTATGACC GGGTAATGGA AGAGCTTTAC CCGCGTCTGA AATCACTCAC CCTGCTGGCG
CGTCAGTATG ATATTGGTAT TAACATCGAT GCCGAAGAGG CCGATCGTCT GGAGATCTCC
CTCGATCTGC TGGAAAATCT CTGTTTCGAG CCGGAACTGG CAGGCTGGAA CGGCATCGGT
TTTGTTATTC AGGCTTATCA AAAACGCTGC CCGTTGGTGA TCGATTACCT GGTTGATCTC
GCCACCCGTA GCCGTCGCCG TCTGATGATT CGCCTGGTGA AAGGCGCGTA CTGGGATAGT
GAAATCAAGC GTGCGCAGAT GGACGGCCTT GAAGGCTATC CGGTTTATAC CCGCAAGGTG
TATACCGACG TTTCTTATCT CGCCTGTGCG AAAAAGCTGC TGGCGGTGCC GAATCTAATC
TACCCGCAGT TCGCGACGCA CAACGCCCAT ACGCTGGCAG CGATTTATCA ACTGGCAGGT
CAGAACTACT ATCCGGGTCA GTACGAGTTC CAGTGCCTGC ATGGTATGGG CGAGCCACTG
TACGAGCAGG TCACAGGGAA AGTTGCCGAC GGTAAACTTA ACCGACCGTG TCGTATTTAT
GCCCCGGTTG GCACACATGA AACGCTGCTG GCGTATCTGG TGCGTCGCCT GCTGGAAAAC
GGTGCTAACA CCTCGTTTGT TAACCGTATT GCCGACACCT CTTTGCCACT GGATGAACTG
GTCGCCGATC CGGTCACTGC TGTAGAAAAA CTGGCGCAAC AGGAAGGGCA AACTGGATTA
CCGCATCCGA AAATTCCCCT GCCGCGCGAT CTTTACGGTC ACGGGCGCGA CAACTCGGCA
GGGCTGGATC TCGCTAACGA ACACCGTCTG GCCTCGCTCT CCTCTGCCCT GCTCAATAGT
GCACTGCAAA AATGGCAGGC CTTGCCAATG CTGGAACAAC CGGTAGCGGC AGGTGAGATG
TCGCCCGTTA TTAACCCTGC GGAACCGAAA GATATTGTGG GCTTTGTGCG TGAAGCCACG
CCGCGTGAAG TAGAACAGGC GCTGGAAAGT GCGGTTAATA ACGCGCCAAT CTGGTTTGCC
ACGCCTCCGG CTGAACGCGC GGCGATTTTG CATCGCGCTG CCGTGCTAAT GGAAAGCCAG
ATGCAGCAAC TGATTGGTAT TCTGGTGCGT GAAGCCGGAA AAACCTTCAG TAACGCTATT
GCCGAAGTGC GCGAAGCGGT CGATTTTCTC CACTACTACG CCGGACAGGT GCGGGATGAT
TTCGCTAACG AAACCCACCG TCCATTAGGG CCTGTGGTGT GTATCAGTCC GTGGAACTTC
CCGCTGGCTA TTTTCACCGG GCAGATCGCT GCCGCACTGG CGGCAGGTAA CAGCGTGCTG
GCAAAACCGG CAGAACAAAC GCCGCTGATT GCCGCGCAAG GGATCGCCAT TTTGCTGGAA
GCGGGTGTAC CCCCTGGCGT GGTGCAATTG CTGCCAGGTC AGGGGGAAAC CGTGGGCGCG
CAACTGACGG GTGATGATCG CGTGCGCGGG GTGATGTTTA CCGGTTCAAC CGAAGTCGCT
ACGTTACTGC AGTGCAATAT CGCCAGCCGC CTGGACGCTC AGGGTCGCCC TATTCCGCTC
ATCGCTGAAA CCGGCGGCAT GAACGCGATG ATTGTCGATT CTTCAGCACT GACCGAACAA
GTCGTCGTGG ATGTGCTGGC CTCGGCGTTC GACAGTGCGG GTCAGCGTTG TTCGGCACTG
CGCGTGCTGT GCCTGCAAGA TGAGATTGCC GACCACACGT TGAAAATGCT GCGCGGTGCA
ATGGCCGAAT GCCGGATGGG TAATCCGGGT CGCCTGACCA CCGATATCGG TCCGGTGATT
GATAGCGAAG CGAAAGCCAA TATTGAGCGC CATATTCAGA CCATGCGTAG CAAAGGCCGT
CCGGTGTTCC AGGCGGTGCG GGAAAACAGC GAAGATGCCC GTGAATGGCA AAGCGGCACC
TTTGTCGCCC CGACGCTGAT CGAACTGGAT GACTTTGCCG AATTGCACAA AGAGGTCTTT
GGTCCGGTGC TGCATGTGGT GCGTTACAAC CGTAACCAGC TACCAGAGCT GATCGAGCAG
ATTAACGCTT CCGGCTATGG TCTGACGCTT GGTGTCCATA CGCGTATTGA TGAAACCATC
GCCCAGGTCA CTGGCTCGGC CCATGTTGGT AACCTGTATG TTAACCGTAA TATGGTGGGC
GCAGTGGTTG GTGTGCAGCC GTTCGGCGGC GAAGGGTTGT CCGGTACCGG GCCGAAAGCA
GGCGGTCCGC TCTATCTCTA CCGTCTGCTG GCGAATCGCC CGGAAAGTGC GCTGGCAGTG
ACGCTCGCGC GTCAGGATGC AGAGTATCCG GTCGATGCAC AGTTGAAAGC CGCATTGACT
CAGCCGCTAA ATGCACTGCG GGAATGGGCA GCAAATCGTC CAGAATTGCA GGCGTTATGT
ACGCAATATG GCGAGCTGGC GCAGGCAGGA ATACAACGAT TGCTGCCGGG GCCGACGGGT
GAACGCAACA CCTGGACGCT GCTGCCGCGT GAGCGCGTGT TGTGTATTGC CGATGATGAG
CAGGATGCGC TGACTCAGCT CGCCGCCGTG CTGGCGGTGG GCAGCCAGGT ACTGTGGCCG
GATGACGCGC TGCATCGTCA GCTAGTAAAG GCATTGCCAT CGGCAGTCAG CGAACGTATT
CAACTGGCGA AAGCGGAAAA TATAACCGCT CAACCCTTTG ATGCGGTGAT CTTCCACGGT
GATTCGGATC AGCTTCGCGC ATTGTGTGAA GCCGTTGCTG CGCGGGATGG CGCAATTGTT
TCGGTGCAGG GTTTTGCCCG TGGCGAAAGC AATATCCTTC TGGAACGGCT GTATATCGAA
CGTTCGCTGA GTGTGAATAC CGCTGCCGCT GGCGGTAACG CCAGTTTAAT GACGATCGGT
TAA
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| Protein sequence | MGTTTMGVKL DDATRERIKS AATRIDRTPH WLIKQAIFSY LEQLENSDTL PELPALLSGA
ANESDEAPTP AEEPHQPFLD FAEQILPQSV SRAAITAAYR RPETEAVSML LEQARLPQPV
AEQAHKLAYQ LADKLRNQKN ASGRAGMVQG LLQEFSLSSQ EGVALMCLAE ALLRIPDKAT
RDALIRDKIS NGNWQSHIGR SPSLFVNAAT WGLLFTGKLV STHNEASLSR SLNRIIGKSG
EPLIRKGVDM AMRLMGEQFV TGETIAEALV NARKLEEKGF RYSYDMLGEA ALTAADAQAY
MVSYQQAIHA IGKASNGRGI YEGPGISIKL SALHPRYSRA QYDRVMEELY PRLKSLTLLA
RQYDIGINID AEEADRLEIS LDLLENLCFE PELAGWNGIG FVIQAYQKRC PLVIDYLVDL
ATRSRRRLMI RLVKGAYWDS EIKRAQMDGL EGYPVYTRKV YTDVSYLACA KKLLAVPNLI
YPQFATHNAH TLAAIYQLAG QNYYPGQYEF QCLHGMGEPL YEQVTGKVAD GKLNRPCRIY
APVGTHETLL AYLVRRLLEN GANTSFVNRI ADTSLPLDEL VADPVTAVEK LAQQEGQTGL
PHPKIPLPRD LYGHGRDNSA GLDLANEHRL ASLSSALLNS ALQKWQALPM LEQPVAAGEM
SPVINPAEPK DIVGFVREAT PREVEQALES AVNNAPIWFA TPPAERAAIL HRAAVLMESQ
MQQLIGILVR EAGKTFSNAI AEVREAVDFL HYYAGQVRDD FANETHRPLG PVVCISPWNF
PLAIFTGQIA AALAAGNSVL AKPAEQTPLI AAQGIAILLE AGVPPGVVQL LPGQGETVGA
QLTGDDRVRG VMFTGSTEVA TLLQCNIASR LDAQGRPIPL IAETGGMNAM IVDSSALTEQ
VVVDVLASAF DSAGQRCSAL RVLCLQDEIA DHTLKMLRGA MAECRMGNPG RLTTDIGPVI
DSEAKANIER HIQTMRSKGR PVFQAVRENS EDAREWQSGT FVAPTLIELD DFAELHKEVF
GPVLHVVRYN RNQLPELIEQ INASGYGLTL GVHTRIDETI AQVTGSAHVG NLYVNRNMVG
AVVGVQPFGG EGLSGTGPKA GGPLYLYRLL ANRPESALAV TLARQDAEYP VDAQLKAALT
QPLNALREWA ANRPELQALC TQYGELAQAG IQRLLPGPTG ERNTWTLLPR ERVLCIADDE
QDALTQLAAV LAVGSQVLWP DDALHRQLVK ALPSAVSERI QLAKAENITA QPFDAVIFHG
DSDQLRALCE AVAARDGAIV SVQGFARGES NILLERLYIE RSLSVNTAAA GGNASLMTIG
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