Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E2207 |
Symbol | lolC |
ID | 6272175 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 2005072 |
End bp | 2006271 |
Gene Length | 1200 bp |
Protein Length | 399 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641726229 |
Product | outer membrane-specific lipoprotein transporter subunit LolC |
Protein accession | YP_001880714 |
Protein GI | 187731599 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.014511 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTACCAAC CTGTCGCTTT ATTTATTGGC CTGCGTTACA TGCGTGGGCG TGCAGCGGAT CGCTTCGGTC GTTTCGTCTC CTGGCTTTCT ACCATCGGCA TTACCCTCGG GGTGATGGCG CTGGTCACAG TATTGTCAGT GATGAACGGC TTTGAGCGCG AGCTGCAAAA CAACATCCTT GGCCTGATGC CACAGGCAAT TCTCTCTTCT GAGCATGGCT CTCTTAACCC GCAGCAACTC CCGGAAACGG CAGTCAAACT GGACGGCGTT AATCGCGTCG CACCTATTAC TACCGGTGAT GTGGTACTGC AAAGCGCGCG CAGCGTGGCG GTCGGGGTGA TGCTGGGTAT CGATCCGGCG CAAAAAGATC CACTAACGCC GTATCTGGTC AATGTGAAAC AAACTGACCT CGAGCCGGGG AAATATAATG TCATCCTCGG CGAACAACTT GCCTCACAGC TAGGCGTTAA TCGCGGTGAT CAAATCCGCA TGATGGTACC ATCTGCCAGC CAGTTCACGC CGATGGGGCG TATTCCAAGT CAGCGCCTGT TCAATGTGAT TGGCACTTTC GCCGCCAACA GTGAAGTCGA TGGCAATGAA ATGCTGGTGA ATATTGAGGA TGCCTCGCGT CTGATGCGTT ATCCGGCAGG CAATATTACC GGCTGGCGTT TGTGGCTGGA TGAGCCGCTG AAAGTCGACT CATTAAGTCA GCAAAAACTG CCTGAAGACA GCAAATGGCA GGATTGGCGT GATCGTAAAG GCGAGTTGTT CCAGGCCGTA CGCATGGAAA AAAATATGAT GGGTTTACTG CTGAGCCTGA TTGTCGCCGT TGCGGCGTTT AACATTATTA CCTCGCTGGG GCTGATGGTG ATGGAGAAGC AGGGCGAAGT AGCGATCCTG CAAACGCAAG GCTTAACTCC GCGACAAATC ATGATGATCT TTATGGTGCA AGGGGCCAGC GCCGGGATTA TCGGTGCGAT CCTCGGAGCG GCGCTTGGCG CACTGCTTGC CAGCCAGTTA AATAATCTGA TGCCAATAAT CGGCGTCCTG CTTGATGGCG CGGCGCTGCC GATGGCTATC GAACCTTTAC AGGTCATTGT TATTGCGCTG GTGGCGATGG CTATCGCGCT GCTGTCTACG CTTTACCCTT CATGGCGCGC TGCCGCCACA CAACCCGCTG AGGCTTTACG TTATGAATAA
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Protein sequence | MYQPVALFIG LRYMRGRAAD RFGRFVSWLS TIGITLGVMA LVTVLSVMNG FERELQNNIL GLMPQAILSS EHGSLNPQQL PETAVKLDGV NRVAPITTGD VVLQSARSVA VGVMLGIDPA QKDPLTPYLV NVKQTDLEPG KYNVILGEQL ASQLGVNRGD QIRMMVPSAS QFTPMGRIPS QRLFNVIGTF AANSEVDGNE MLVNIEDASR LMRYPAGNIT GWRLWLDEPL KVDSLSQQKL PEDSKWQDWR DRKGELFQAV RMEKNMMGLL LSLIVAVAAF NIITSLGLMV MEKQGEVAIL QTQGLTPRQI MMIFMVQGAS AGIIGAILGA ALGALLASQL NNLMPIIGVL LDGAALPMAI EPLQVIVIAL VAMAIALLST LYPSWRAAAT QPAEALRYE
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