Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E2205 |
Symbol | lolE |
ID | 6269101 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 2003134 |
End bp | 2004378 |
Gene Length | 1245 bp |
Protein Length | 414 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641726227 |
Product | outer membrane-specific lipoprotein transporter subunit LolE |
Protein accession | YP_001880712 |
Protein GI | 187732240 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family [TIGR02213] lipoprotein releasing system, transmembrane protein LolE |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCGATGC CTTTATCGTT ATTAATTGGC CTGCGTTTTA GTCGCGGACG GCGGCGCGGT GGCATGGTGT CGCTGATCTC CGTCATTTCT ACCATTGGCA TTGCCCTCGG TGTGGCGGTA TTGATCGTCG GCTTAAGCGC GATGAACGGC TTTGAACGCG AACTGAATAA CCGCATTCTG GCGGTGTTGC CGCATGGTGA AATCGAAGCG GTAAATCAGC CATGGACTAA CTGGCAGGAA GCACTGGATA AAGTGCAGAA AGTGCCGGGT ATTGCCGCCG CTGCGCCGTA TATCAATTTC ACCGGGCTGG TGGAAAGTGG AGCGAATCTG CGCGCAATCC AGGTGAAGGG CGTTAACCCA CAACAGGAAC AGCGTCTGAG CGCATTACCC TCGTTTGTTC AGGGGGATGC GTGGCGCAAT TTTAAAGCGG GCGAACAGCA AATTATCATC GGCAAAGGCG TGGCGGATGC GCTGAAAGTG AAGCAGGGCG ATTGGGTGTC GATCATGATC CCCAACTCGA ATCCTGAGCA TAAACTGATG CAGCCAAAAC GTGTGCGTTT GCACGTTGCG GGTATTTTGC AGTTGAGTGG CCAACTCGAT CACAGTTTTG CCATGATCCC GCTGGCGGAT GCCCAACAAT ATCTTGATAT GGGTTCCAGC GTGTCAGGTA TTGCCCTTAA AATGACGGAT GTTTTCAACG CCAATAAGCT GGTACGCGAT GCGGGTGAAA TGACCAACAG CTATGTTTAT ATTAAAAGCT GGATTGGTAC TTACGGCTAT ATGTATCGCG ATATCCAGAT GATCCGCGCC ATTATGTATC TGGCGATGGT ACTGGTGATT GGCGTGGCCT GTTTCAACAT CGTCTCCACC TTAGTGATGG CGGTGAAAGA CAAGAGTGGC GATATCGCAG TATTAAGAAC GCTGGGGGCG AAAGATGGTT TAATTCGCGC CATCTTTGTC TGGTATGGAT TGCTGGCAGG GCTGTTCGGC AGCCTGTGTG GGCTGATTAT CGGCGTAGTT GTTTCACTGC AACTTACCCC GATTATTGAG CGGATTGAAA AGCTGATCGG TCATCAGTTC CTCTCCAGCG ATATCTATTT TATTGACTTC CTGCCATCGG AATTGCACTG GCTGGACGTC TTCTACGTAC TGGTCACAGC ATTGTTGCTG AGTCTTTTGG CAAGTTGGTA TCCGGCGCGG CGCGCCAGTA ATATTGACCC TGCGCGAGTC CTTAGCGGCC AGTAA
|
Protein sequence | MAMPLSLLIG LRFSRGRRRG GMVSLISVIS TIGIALGVAV LIVGLSAMNG FERELNNRIL AVLPHGEIEA VNQPWTNWQE ALDKVQKVPG IAAAAPYINF TGLVESGANL RAIQVKGVNP QQEQRLSALP SFVQGDAWRN FKAGEQQIII GKGVADALKV KQGDWVSIMI PNSNPEHKLM QPKRVRLHVA GILQLSGQLD HSFAMIPLAD AQQYLDMGSS VSGIALKMTD VFNANKLVRD AGEMTNSYVY IKSWIGTYGY MYRDIQMIRA IMYLAMVLVI GVACFNIVST LVMAVKDKSG DIAVLRTLGA KDGLIRAIFV WYGLLAGLFG SLCGLIIGVV VSLQLTPIIE RIEKLIGHQF LSSDIYFIDF LPSELHWLDV FYVLVTALLL SLLASWYPAR RASNIDPARV LSGQ
|
| |