| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E2103 |
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| Symbol | yebU |
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| ID | 6273013 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | + |
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| Start bp | 1913037 |
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| End bp | 1914482 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641726140 |
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| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
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| Protein accession | YP_001880634 |
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| Protein GI | 187732363 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.0235271 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCGTGG CCCAACACAC CGTTTATTTC CCGGACGCGT TTCTGACACA AATGCGCGAA
GCTATGCCTT CGACGCTCTC ATTTGATGAT TTTCTTGCCG CCTGTCAGCG CCCGTTGCGC
CGCAGCATTC GCGTTAATAC GCTGAAAATC TCCGTTGCTG ATTTCCTGCA ATTAACCGCT
CCTTATGGCT GGACGCTTAC GCCAATTCCG TGGTGTGAAG AAGGTTTCTG GATTGAACGC
GACAATGAAG ATGCATTGCC ATTGGGTAGT ACCGCCGAGC ATTTAAGTGG CCTGTTTTAT
ATTCAGGAAG CCAGTTCAAT GTTGCCCGTC GCCGCCTTGT TTGCTGACGG TAATGCACCA
CAGCGGGTGA TGGATGTCGC TGCTGCGCCA GGCTCAAAAA CGACGCAAAT TGCCGCGCGG
ATGAATAACG AAGGGGCAAT CCTTGCCAAT GAGTTTTCCG CCAGTCGGGT AAAAGTGTTA
CATGCCAATA TCAGCCGCTG TGGCATCAGT AATGTTGCGC TCACACATTT TGATGGCCGC
GTGTTTGGTG CGGCAGTGCC AGAAATGTTT GATGCCATTT TGCTGGACGC TCCCTGCTCC
GGCGAAGGCG TGGTGCGTAA AGATCCCGAT GCGCTAAAAA ACTGGTCACC AGAAAGCAAT
CAGGAAATCG CAGCTACACA ACGGGAGCTT ATCGACAGCG CCTTTCATGC ATTACGTCCT
GGTGGTACGC TGGTTTACTC GACCTGTACC TTAAACCAGG AAGAAAACGA AGCCGTTTGC
CTGTGGCTGA AAGAGACTTA CCCCGACGCA GTAGAGTTTT TACCACTTGG CGATCTCTTC
CCTGGTGCAA ACAAAGCGCT GACCGAAGAA GGCTTTTTGC ATGTTTTCCC ACAAATTTAC
GACTGCGAAG GCTTCTTCGT TGCTCGTCTG CGTAAAACTC AGGCGATTCC CGCCTTACCC
GCCCCCAAAT ACAAAGTCGG TAATTTTCCG TTCAGCCCGG TGAAAGATCG CGAAGCTGGA
CAAATTCGCC AGGCGGCTGC AGATGTTGGC TTAAACTGGG ATGAAAACCT GCGCCTCTGG
CAGCGTGACA AAGAACTGTG GTTGTTCCCG GTGGGCATTG AAGCCCTGAT CGGTAAAGTC
CGATTTTCTC GCTTGGGGAT TAAACTTGCC GAAACGCACA ACAAAGGTTA TCGCTGGCAG
CATGAAGCAG TTATTGCCCT TGCCACCCCC GACAATGTGA ACGCTTTTGA ACTGACACCG
CAGGAAGCGG AGGAGTGGTA TCGCGGGCGC GATGTTTACC CGCAAGCCGC GCCAGTGGCG
GATGACGTGT TGGTTACTTT CCAGCATCAA CCGATTGGTT TAGCCAAACG GATTGGTTCG
CGATTGAAAA ACAGCTATCC GCGTGAACTG GTGCGCGATG GGAAACTTTT TACCGGTAAC
GCCTGA
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| Protein sequence | MLVAQHTVYF PDAFLTQMRE AMPSTLSFDD FLAACQRPLR RSIRVNTLKI SVADFLQLTA
PYGWTLTPIP WCEEGFWIER DNEDALPLGS TAEHLSGLFY IQEASSMLPV AALFADGNAP
QRVMDVAAAP GSKTTQIAAR MNNEGAILAN EFSASRVKVL HANISRCGIS NVALTHFDGR
VFGAAVPEMF DAILLDAPCS GEGVVRKDPD ALKNWSPESN QEIAATQREL IDSAFHALRP
GGTLVYSTCT LNQEENEAVC LWLKETYPDA VEFLPLGDLF PGANKALTEE GFLHVFPQIY
DCEGFFVARL RKTQAIPALP APKYKVGNFP FSPVKDREAG QIRQAAADVG LNWDENLRLW
QRDKELWLFP VGIEALIGKV RFSRLGIKLA ETHNKGYRWQ HEAVIALATP DNVNAFELTP
QEAEEWYRGR DVYPQAAPVA DDVLVTFQHQ PIGLAKRIGS RLKNSYPREL VRDGKLFTGN
A
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