Gene SbBS512_E2018 details

Gene Information

• Locus tag: SbBS512_E2018
• Symbol: topB
• ID: 6271493
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: -
• Start bp: 1836243
• End bp: 1838204
• Gene Length: 1962 bp
• Protein Length: 653 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 641726066
• Product: DNA topoisomerase III
• Protein accession: YP_001880560
• Protein GI: 187731958
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0550] Topoisomerase IA
• TIGRFAM ID: [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.000256516
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGGTTGT TTATTGCCGA AAAACCGAGT CTGGCGCGCG CCATTGCTGA TGTCCTGCCC 
AAACCGCACC GGAAAGGCGA TGGCTTTATC GAGTGCGGTA ATGGTCAGGT GGTGACCTGG 
TGTATCGGTC ACCTGCTTGA GCAGGCGCAG CCAGACGCCT ACGACAGCCG CTATGCGCGC 
TGGAATCTTG CGGATTTGCC GATTGTCCCG GAAAAGTGGC AATTACAGCC CCGACCCTCC 
GTGACCAAAC AACTTAACGT CATCAAACGC TTCCTGCATG AAGCCAGCGA AATCGTTCAC 
GCCGGGGACC CGGATCGTGA AGGGCAACTG CTGGTGGATG AAGTGCTGGA CTATCTGCAA 
CTGGCACCGG AAAAGCGCCA GCAGGTGCAG CGTTGCTTGA TAAACGACCT GAACCCGCAG 
GCGGTTGAGC GGGCGATCGA CCGTCTTCGG TCCAACAGTG AGTTTGTGCC ATTGTGCGTT 
TCTGCGCTGG CGCGAGCGCG TGCCGACTGG CTGTACGGCA TCAATATGAC CCGTGCGTAT 
ACCATTCTCG GTCGCAATGC CGGTTATCAG GGCGTACTTT CCGTGGGACG CGTGCAGACA 
CCCGTGCTCG GGCTGGTGGT GCGCCGCGAT GAAGAGATTG AAAACTTCGT GGCGAAAGAC 
TTCTTTGAAG TCAAAGCACA TATCGTGACA CCTGCCGATG AGCGGTTTAC CGCTATCTGG 
CAACCGAGCG AAGCGTGTGA ACCGTACCAG GATGAAGAAG GGCGCTTGTT ACATCGTCCA 
CTGGCGGAGC ATGTGGTTAA CCGCATTAGT GGTCAACCAG CAATTGTCAC CAGCTATAAC 
GATAAACGGG AATCAGAATC CGCGCCGCTG CCTTTTTCGC TTTCGGCGTT GCAGATTGAA 
GCGGCAAAAC GCTTTGGTCT GAGCGCGCAG AACGTGCTTG ATATCTGCCA GAAGCTGTAC 
GAAACGCACA AGCTAATCAC TTATCCGCGT TCCGATTGTC GCTATTTGCC AGAAGAACAT 
TTTGCCGGAC GCCACGCGGT GATGAATGCC ATCAGCGTTC ATGCACCAGA TCTGTTGCCG 
CAACCAGTGG TAGATCCAGA TATACGCAAC CGCTGTTGGG ATGACAAAAA GGTCGATGCA 
CACCACGCCA TCATCCCGAC CGCACGGAGT TCTGAGATCA ACCTGACGGA GAACGAAGCG 
AAGGTCTATA ACCTGATTGC CCGTCAGTAC TTGATGCAGT TCTGCCCGGA TGCGGTGTTC 
CGCAAGTGTG TTATCGAACT GGACATTGCC AAAGGCAAAT TTGTCGCTAA AGCGCGTTTT 
CTTGCTGAAG CAGGCTGGCG CACGCTGTTA GGCAGCAAAG AGCGCGATGA AGAAAACGAC 
GGTACGCCAT TGCCTGTGGT GGCGAAAGGC GATGAGTTGC TGTGTGAAAA AGGTGAAGTG 
GTAGAGCGGC AAACCCAGCC GCCGCGCCAT TTTACCGATG CAACACTGCT TTCGGCGATG 
ACCGGGATCG CGCGCTTTGT GCAGGACAAA GATCTGAAAA AGATCCTTCG TGCGACCGAT 
GGTCTGGGGA CAGAAGCAAC CCGTGCCGGG ATTATTGAAC TGCTGTTCAA GCGTGGTTTT 
CTGACCAAAA AAGGGCGCTA TATCCACTCT ACCGACGCCG GAAAAGCGTT ATTCCATTCG 
CTGCCAGAAA TGGCGACGCG ACCGGACATG ACCGCGCACT GGGAATCGGT GCTGACGCAA 
ATCAGCGAAA AGCAGTGTCG CTATCAGGAC TTTATGCAGC CGCTGGTGGG GACGCTATAT 
CAGCTTATTG ATCAAGCCAA ACGTACGCCG GTGCGGCAGT TTCGCGGCAT TGTGGCTCCG 
GGCAGTGGTG GCAGTGCTGA TAAGAAAAAG GCTGCACCGC GTAAACGTAG TGCGAAAAAA 
AGTCCGCCAG CAGATGAAGT CGGAAGCGGG GCGATAGCGT AA 

 

Protein sequence

MRLFIAEKPS LARAIADVLP KPHRKGDGFI ECGNGQVVTW CIGHLLEQAQ PDAYDSRYAR 
WNLADLPIVP EKWQLQPRPS VTKQLNVIKR FLHEASEIVH AGDPDREGQL LVDEVLDYLQ 
LAPEKRQQVQ RCLINDLNPQ AVERAIDRLR SNSEFVPLCV SALARARADW LYGINMTRAY 
TILGRNAGYQ GVLSVGRVQT PVLGLVVRRD EEIENFVAKD FFEVKAHIVT PADERFTAIW 
QPSEACEPYQ DEEGRLLHRP LAEHVVNRIS GQPAIVTSYN DKRESESAPL PFSLSALQIE 
AAKRFGLSAQ NVLDICQKLY ETHKLITYPR SDCRYLPEEH FAGRHAVMNA ISVHAPDLLP 
QPVVDPDIRN RCWDDKKVDA HHAIIPTARS SEINLTENEA KVYNLIARQY LMQFCPDAVF 
RKCVIELDIA KGKFVAKARF LAEAGWRTLL GSKERDEEND GTPLPVVAKG DELLCEKGEV 
VERQTQPPRH FTDATLLSAM TGIARFVQDK DLKKILRATD GLGTEATRAG IIELLFKRGF 
LTKKGRYIHS TDAGKALFHS LPEMATRPDM TAHWESVLTQ ISEKQCRYQD FMQPLVGTLY 
QLIDQAKRTP VRQFRGIVAP GSGGSADKKK AAPRKRSAKK SPPADEVGSG AIA