Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E1818 |
Symbol | rnfC |
ID | 6269610 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 1663549 |
End bp | 1665675 |
Gene Length | 2127 bp |
Protein Length | 708 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 641725886 |
Product | electron transport complex protein RnfC |
Protein accession | YP_001880384 |
Protein GI | 187732180 |
COG category | [C] Energy production and conversion |
COG ID | [COG4656] Predicted NADH:ubiquinone oxidoreductase, subunit RnfC |
TIGRFAM ID | [TIGR01945] electron transport complex, RnfABCDGE type, C subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.243946 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTAAGT TATTCTCTGC ATTCAGAAAA AATAAAATCT GGGATTTCAA CGGCGGCATC CATCCACCGG AGATGAAAAC CCAGTCCAAC GGTACACCCC TGCGCCAGGT ACCACTGGCG CAGCGTTTTG TTATTCCACT GAAACAGCAT ATTGGCGCTG AAGGTGAGTT GTGCGTTAGC GTCGGCGATA AAGTATTGCG CGGCCAGCCG CTTACCCGTG GTCGCGGCAA AATGCTGCCT GTTCACGCGC CCACCTCGGG TACCGTTACG GCTATTGCGC CCCACTCTAC GGCTCATCCT TCAGCTTTAG CTGAATTAAG CGTGATTATT GATGCCGATG GTGAAGACTG CTGGATCCCG CGCGACGGCT GGGCCGATTA TCGCACTCGC AGTCGCGAAG AGTTAATCGA GCGCATACAT CAGTTTGGTG TTGCCGGGCT GGGCGGTGCA GGATTCCCGA CAGGCGTTAA ATTGCAGGGT GGCGGAGATA AGATTGAAAC GTTGATTATC AACGCGGCTG AGTGCGAGCC GTACATTACC GCCGATGACC GTTTGATGCA GGATTGCGCG GCTCAGCTCG TAGAGGGTAT TCGCATTCTT GCGCATATTC TGCAGCCACG CGAAATTCTT ATCGGCATTG AAGATAACAA ACCGCAGGCG ATTTCCATGC TGCGCGCGGT GCTGGCGGAC TCTAACGATA TTTCTCTGCG GGTGATTCCA ACCAAATATC CTTCTGGCGG TGCTAAACAA TTAACCTACA TTCTGACCGG GAAGCAGGTT CCACATGGCG GGCGTTCATC CGATATCGGC GTATTAATGC AAAACGTCGG CACTGCTTAT GCAGTGAAAC GTGCCGTTAT TGATGGCGAG CCGATTACCG AGCGTGTTGT AACCCTGACT GGCGAAGCAA TCGCTCGCCC GGGCAACGTC TGGGCACGGC TGGGGACGCC AGTGCGTCAT TTATTGAATG ATGCCCGATT CTGCCCCTCT GCCGATCAAA TGGTGATTAT GGGTGGCCCG CTAATGGGCT TTACCTTGCC ATGGCTGGAT GTCCCGGTCG TAAAGATTAC CAACTGTCTG TTGGCTCCCT CTGCCAATGA ACTTGGCGAA CCACAGGAAG AACAAAGCTG CATCCGGTGT AGCGCCTGTG CTGACGCCTG CCCTGCGGAT CTTTTGCCGC AACAGTTGTA CTGGTTCAGC AAAGGTCAGC AACACGATAA AGCTACCACG CATAACATTG CTGATTGCAT TGAATGTGGG GCTTGCGCGT GGGTTTGCCC GAGCAATATT CCCCTGGTGC AATATTTCCG TCAGGAAAAA GCTGAAATTG CGGCTATTCG TCAGGAAGAA AAGCGCGCCG CAGAAGCCAA AGCGCGTTTC GAAGCGCGCC AGGCTCGTCT GGAGCGCGAA AAAGCGGCTC GCCTTGAACG ACATAAGAGC GCAGCCGTTC AACCTGCAGC CAAAGATAAA GATGCGATTG CTGCCGCTCT GGCGCGGGTG AAAGAGAAAC AGGCCCAGGC TACACAGCCT ATTGTGATTA AAGCGGGCGA ACGCCCGGAT AACAGTGCAA TTATTGCAGC ACGGGAAGCC CGTAAAGCGC AAGCCAGAGC GAAACAGGCA GAACTGCAGC AAACTAACGA CGCAGCAACC GTTGCTGATC CACGTAAAAC TGCCGTTGAA GCAGCTATCG CCCGCGCCAA AGCGCGCAAG CTGGAACAGC AACAGGCTAA TGCGGAACCA GAAGAACAGG TCGATCCGCG CAAAGCCGCC ATCGAAGCCG CTATTGCCCG AGCCAAAGCT CGCAAACTGG AACAGCAACA GGCTAATGCG GAGCCAGAAG AACAGGTTGA TCCGCGCAAA GCGGCCGTCG AAGCGGCTAT TGCACGCGCC AAAGCACGCA AGCTGGAACA GCAACAGGCT AATGCGGTAC CTGAAGAACA GGTTGATCCG CGCAAAGCCG CCGTCGAAGC CGCTATTGCC CGTGCCAAAG CGCGCAAGCT GGAACAGCAA CAGACTAACG CAGAACCAGA AGAACAGGTT GATCCGCGCA AAGCGGCAGT TGCCGCGGCT ATTGCCCGCG CTCAGGCCAA AAAAGCCGCC CAGCAAAAGG TTGTAAACGA GGACTAA
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Protein sequence | MLKLFSAFRK NKIWDFNGGI HPPEMKTQSN GTPLRQVPLA QRFVIPLKQH IGAEGELCVS VGDKVLRGQP LTRGRGKMLP VHAPTSGTVT AIAPHSTAHP SALAELSVII DADGEDCWIP RDGWADYRTR SREELIERIH QFGVAGLGGA GFPTGVKLQG GGDKIETLII NAAECEPYIT ADDRLMQDCA AQLVEGIRIL AHILQPREIL IGIEDNKPQA ISMLRAVLAD SNDISLRVIP TKYPSGGAKQ LTYILTGKQV PHGGRSSDIG VLMQNVGTAY AVKRAVIDGE PITERVVTLT GEAIARPGNV WARLGTPVRH LLNDARFCPS ADQMVIMGGP LMGFTLPWLD VPVVKITNCL LAPSANELGE PQEEQSCIRC SACADACPAD LLPQQLYWFS KGQQHDKATT HNIADCIECG ACAWVCPSNI PLVQYFRQEK AEIAAIRQEE KRAAEAKARF EARQARLERE KAARLERHKS AAVQPAAKDK DAIAAALARV KEKQAQATQP IVIKAGERPD NSAIIAAREA RKAQARAKQA ELQQTNDAAT VADPRKTAVE AAIARAKARK LEQQQANAEP EEQVDPRKAA IEAAIARAKA RKLEQQQANA EPEEQVDPRK AAVEAAIARA KARKLEQQQA NAVPEEQVDP RKAAVEAAIA RAKARKLEQQ QTNAEPEEQV DPRKAAVAAA IARAQAKKAA QQKVVNED
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