Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E1793 |
Symbol | |
ID | 6269424 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 1637063 |
End bp | 1637785 |
Gene Length | 723 bp |
Protein Length | 240 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641725862 |
Product | short chain dehydrogenase |
Protein accession | YP_001880360 |
Protein GI | 187730080 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.0661152 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTAAAG CCCAGCCCTT GCCAATATTA ATTACTGGCG GAGGTCGTCG CATCGGCCTC GCCCTCGCCT GGCATTTCAT TAATCAAAAG CAACCGGTGA TTGTCAGCTA TCGGACGCAC TATCCAGCCA TTGATGGACT GATTAAGGCA GGTGCGCAGT GTATTCAGGC TGATTTTTCG ACCAACGACG GTGTGATGGC GTTTGCCGAT GAAGTACTAA AAAGCACCCA TGGTCTGCGT GCTATTTTGC ATAACGCCAG TGCGTGGATG GCGGAAAAAC CGGGTGCGCC ACTGGCCGAC GTACTGGCTT GCATGATGCA GATCCACGTT AATACCCCAT ACCTGCTCAA CCATGCGCTG GAAAGATTAC TGCGTGGGCA CGGACACGCC GCCAGCGATA TCATTCACTT TACCGATTAT GTGGTGGAGC GCGGTAGCGA CAAGCATATT GCGTATGCTG CAAGCAAAGC GGCACTGGAT AATATGACCC GCTCGTTTGC CCGCAAGCTG GCACCGGAAG TGAAAGTGAA TTCTATTGCT CCATCGCTGA TCCTGTTTAA TGAACATGAT GATGCCGAAT ATCGACAACA GGCGCTGAAT AAATCACTGA TGAAAACCGC GCCTGGCGAG AAAGAAGTGA TCGACCTGGT CGATTACTTA CTTACCAGTT GCTTTGTCAC CGGACGCAGT TTCCCACTTG ATGGCGGTCG TCATCTGCGT TAA
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Protein sequence | MGKAQPLPIL ITGGGRRIGL ALAWHFINQK QPVIVSYRTH YPAIDGLIKA GAQCIQADFS TNDGVMAFAD EVLKSTHGLR AILHNASAWM AEKPGAPLAD VLACMMQIHV NTPYLLNHAL ERLLRGHGHA ASDIIHFTDY VVERGSDKHI AYAASKAALD NMTRSFARKL APEVKVNSIA PSLILFNEHD DAEYRQQALN KSLMKTAPGE KEVIDLVDYL LTSCFVTGRS FPLDGGRHLR
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