Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E1762 |
Symbol | |
ID | 6271761 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 1604465 |
End bp | 1605226 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 641725836 |
Product | transcriptional regulator YdeO |
Protein accession | YP_001880334 |
Protein GI | 187733320 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGCTCG TTTGTTCTGT TATATTTATT CATCATGCCT TCAACGCTAA CATTTTAGAT AAAGATTACG CCTTCTCTGA CGGCGAGATC CTGATGGTAG ATAACGCTGT TCGTACGCAT TTTGAACCTT ATGAGCGGCA TTTTAAAGAG ATCGGATTTA CTGAAAATAC CATTAAAAAA TATCTACAAT GCACTAACAT CCAGACAGTG ACGGTGCCTG TTCCTGCGAA GTTTTTACGT GCTTCAAATG TACCGACTGG ATTGCTTAAT GAAATGATTG CTTATCTCAA CTCGGAAGAA CGCAATCATC ATAATTTTTC AGAACTTTTG CTTTTTTCTT GCCTGTCTAT TTTTGCCGCA TGCAAAGGTT TCATTACACT ATTAACTAAC GGTGTGCTAT CCGTTTCCGG AAAAGTGAGA AATATTGTCA ACATGAAGCT GGCGCACCCA TGGAAGCTGA AAGATATTTG TGACTGCCTG TACATCAGTG AAAGCCTGTT GAAGAAAAAA CTAAAGCAAG AGCAAACGAC ATTCTCACAG ATTCTATTAG ATGCCAGAAT GCAGCACGCA AAAAATTTGA TACGCGTAGA AGGTTCAGTC AATAAAATTG CCGAACAATG TGGTTATGCC AGTACTTCTT ATTTTATTTA TGCGTTCCGC AAACATTTCG GCAACAGTCC GAAGAGAGTT TCTAAGGAGT ACCGTTGTCA AAGTCACACG GGTATGAATA CGGGCAACAC GATGAGTGCT TTAGCTATTT GA
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Protein sequence | MSLVCSVIFI HHAFNANILD KDYAFSDGEI LMVDNAVRTH FEPYERHFKE IGFTENTIKK YLQCTNIQTV TVPVPAKFLR ASNVPTGLLN EMIAYLNSEE RNHHNFSELL LFSCLSIFAA CKGFITLLTN GVLSVSGKVR NIVNMKLAHP WKLKDICDCL YISESLLKKK LKQEQTTFSQ ILLDARMQHA KNLIRVEGSV NKIAEQCGYA STSYFIYAFR KHFGNSPKRV SKEYRCQSHT GMNTGNTMSA LAI
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