Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E1756 |
Symbol | gadB |
ID | 6272009 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 1594828 |
End bp | 1596228 |
Gene Length | 1401 bp |
Protein Length | 466 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641725830 |
Product | glutamate decarboxylase GadB |
Protein accession | YP_001880328 |
Protein GI | 187731458 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
TIGRFAM ID | [TIGR01788] glutamate decarboxylase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.347541 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGATAAGA AGCAAGTAAC GGATTTAAGG TCGGAACTAC TCGATTCACG TTTTGGTGCG AAGTCTATTT CCACTATCGC AGAATCAAAA CGTTTTCCGC TGCACGAAAT GCGCGACGAT GTCGCATTCC AGATTATCAA TGACGAATTA TATCTTGATG GCAACGCTCG TCAGAACCTG GCCACTTTCT GCCAGACCTG GGACGACGAA AATGTCCACA AATTGATGGA TTTATCCATT AACAAAAACT GGATCGACAA AGAAGAATAT CCGCAATCCG CAGCCATCGA CCTGCGTTGC GTAAATATGG TTGCCGATCT GTGGCATGCG CCTGCGCCGA AAAATGGTCA GGCCGTTGGC ACCAACACCA TTGGTTCTTC CGAGGCCTGT ATGCTCGGCG GGATGGCGAT GAAATGGCGT TGGCGCAAGC GTATGGAAGC TGCAGGCAAA CCAACGGATA AACCAAACCT GGTGTGCGGT CCGGTACAAA TCTGCTGGCA TAAATTCGCC CGCTACTGGG ATGTGGAGCT GCGTGAGATC CCTATGCGCC CCGGTCAGTT GTTTATGGAC CCGAAACGCA TGATTGAAGC CTGTGACGAA AACACCATCG GCGTGGTGCC GACTTTCGGC GTGACCTACA CTGGTAACTA TGAGTTCCCA CAACCGCTGC ACGATGCGCT GGATAAATTC CAGGCCGATA CCGGTATCGA CATCGACATG CACATCGACG CTGCCAGCGG TGGCTTCCTG GCACCGTTCG TCGCCCCGGA TATCGTCTGG GACTTCCGCC TGCCGCGTGT GAAATCGATC AGTGCTTCAG GCCATAAATT CGGTCTGGCT CCGCTGGGCT GCGGCTGGGT TATCTGGCGT GACGAAGAAG CGCTGCCGCA GGAACTGGTG TTCAACGTTG ACTACCTGGG TGGTCAAATT GGTACTTTCG CCATCAACTT CTCCCGCCCG GCGGGTCAGG TAATTGCACA GTACTATGAA TTCCTGCGCC TCGGTCGTGA AGGCTACACC AAAGTACAGA ACGCCTCTTA CCAGGTTGCC GCTTATCTGG CGGATGAAAT CGCCAAACTG GGGCCGTATG AGTTCATCTG TACGGGTCGC CCGGACGAAG GCATCCCGGC GGTTTGCTTC AAACTGAAAG ATGGTGAAGA TCCGGGATAC ACCCTGTACG ACCTCTCTGA ACGTCTGCGT CTGCGCGGCT GGCAGGTTCC GGCCTTCACT CTCGGCGGTG AAGCCACCGA CATCGTGGTG ATGCGCATTA TGTGTCGTCG CGGCTTCGAA ATGGACTTTG TTGAACTGTT GCTGGAAGAC TACAAAGCCT CCCTGAAATA TCTCAGCGAT CACCCGAAAC TGCAGGGTAT TGCCCAGCAG AACAGCTTTA AACATACCTG A
|
Protein sequence | MDKKQVTDLR SELLDSRFGA KSISTIAESK RFPLHEMRDD VAFQIINDEL YLDGNARQNL ATFCQTWDDE NVHKLMDLSI NKNWIDKEEY PQSAAIDLRC VNMVADLWHA PAPKNGQAVG TNTIGSSEAC MLGGMAMKWR WRKRMEAAGK PTDKPNLVCG PVQICWHKFA RYWDVELREI PMRPGQLFMD PKRMIEACDE NTIGVVPTFG VTYTGNYEFP QPLHDALDKF QADTGIDIDM HIDAASGGFL APFVAPDIVW DFRLPRVKSI SASGHKFGLA PLGCGWVIWR DEEALPQELV FNVDYLGGQI GTFAINFSRP AGQVIAQYYE FLRLGREGYT KVQNASYQVA AYLADEIAKL GPYEFICTGR PDEGIPAVCF KLKDGEDPGY TLYDLSERLR LRGWQVPAFT LGGEATDIVV MRIMCRRGFE MDFVELLLED YKASLKYLSD HPKLQGIAQQ NSFKHT
|
| |