| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E1755 |
|---|
| Symbol | gadC |
|---|
| ID | 6269311 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 1593137 |
|---|
| End bp | 1594672 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 511 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641725829 |
|---|
| Product | glutamate:gamma aminobutyrate antiporter |
|---|
| Protein accession | YP_001880327 |
|---|
| Protein GI | 187731921 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | [TIGR00910] glutamate:gamma-aminobutyrate antiporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.489766 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTACAT CAGTACAGAC AGGTAAAGCT AAGCAGCTCA CATTACTCGG ATTCTTTGCC
ATAACGGCAT CGATGGTAAT GGCTGTTTAT GAATACCCTA CCTTCGCAAC ATCGGGCTTT
TCATTAGTCT TCTTCCTGCT ATTAGGCGGG ATTTTATGGT TTATTCCCGT GGGACTTTGT
GCTGCGGAAA TGGCCACCGT CGACGGCTGG GAAGAAGGTG GTGTCTTCGC CTGGGTATCA
AATACTCTGG GGCCGAGATG GGGATTTGCA GCGATCTCAT TTGGCTATCT GCAAATCGCC
ATTGGTTTTA TTCCGATGCT CTATTTCGTG TTAGGGGCAC TCTCCTACAT CCTGAAATGG
CCAGCGCTGA ATGAAGACCC CATTACCAAA ACTATTGCAG CACTCATCAT TCTTTGGGCG
CTGGCATTAA CGCAGTTTGG TGGCACGAAA TACACGGCGC GAATTGCTAA AGTTGGCTTC
TTCGCCGGTA TCCTGTTACC TGCATTTATT TTGATCGCAT TAGCGGCTAT TTATCTGCAC
TCCGGTGCCC CCGTTGCTAT CGAAATGGAT TCGAAGACCT TCTTCCCTGA CTTCTCTAAA
GTGGGCACAC TGGTTGTATT TGTTGCCTTC ATTTTGAGTT ATATGGGCGT AGAAGCTTCC
GCAACTCACG TCAATGAAAT GAGCAACCCC GGGCGCGACT ATCCACTGGC TATGTTACTG
CTGATGGTGG CGGCAATCTG CTTAAGCTCT GTTGGCGGTT TATCTATTGC GATGGTCATT
CCGGGTAATG AAATCAACCT CTCCGCAGGG GTAATGCAAA CCTTTACCGT TCTGATGTCC
CATGTGGCAC CGGAAATTGA GTGGACGGTT CGCGTGATCT CCGCACTGCT GTTGCTGGGT
GTTCTGGCGG AAATCGCCTC CTGGATTGTT GGTCCTTCTC GCGGGATGTA TGTCACAGCG
CAGAAAAACC TGCTGCCAGC GGCATTCGCT AAAATGAACA AAAATGGCGT ACCGGTAACG
CTGGTCATTT CGCAGCTGGT GATTACTTCT ATCGCGTTGA TCATCCTCAC CAATACCGGT
GGCGGTAACA ACATGTCCTT CCTGATCGCA CTGGCGCTGA CGGTGGTGAT TTATCTGTGT
GCTTATTTCA TGCTGTTTAT TGGCTACATT GTGTTGGTTC TTAAACATCC TGACTTAAAA
CGCACATTTA ATATCCCTGG TGGTAAAGGG GTGAAACTGG TCGTGGCAAT TGTCGGTCTG
CTGACTTCAA TTATGGCGTT TATTGTTTCC TTCCTGCCGC CGGATAACAT CCAGGGTGAC
TCTACCGATA TGTATGTTGA ATTACTGGTC GTTAGTTTCC TGGTGGTACT TGCCCTGCCC
TTTATTCTCT ATGCTGTTCA TGATCGTAAA GGCAAAGCGA ATACCGGCGT CACTCTGGAG
CCAATCAACA GTCAGAACGC ACCAAAAGGT CACTTCTTCC TGCACCCGCG TGCACGTTCA
CCACACTATA TTGTGATGAA TGACAAGAAA CACTAA
|
|---|
| Protein sequence | MATSVQTGKA KQLTLLGFFA ITASMVMAVY EYPTFATSGF SLVFFLLLGG ILWFIPVGLC
AAEMATVDGW EEGGVFAWVS NTLGPRWGFA AISFGYLQIA IGFIPMLYFV LGALSYILKW
PALNEDPITK TIAALIILWA LALTQFGGTK YTARIAKVGF FAGILLPAFI LIALAAIYLH
SGAPVAIEMD SKTFFPDFSK VGTLVVFVAF ILSYMGVEAS ATHVNEMSNP GRDYPLAMLL
LMVAAICLSS VGGLSIAMVI PGNEINLSAG VMQTFTVLMS HVAPEIEWTV RVISALLLLG
VLAEIASWIV GPSRGMYVTA QKNLLPAAFA KMNKNGVPVT LVISQLVITS IALIILTNTG
GGNNMSFLIA LALTVVIYLC AYFMLFIGYI VLVLKHPDLK RTFNIPGGKG VKLVVAIVGL
LTSIMAFIVS FLPPDNIQGD STDMYVELLV VSFLVVLALP FILYAVHDRK GKANTGVTLE
PINSQNAPKG HFFLHPRARS PHYIVMNDKK H
|
|---|
| |