Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E1690 |
Symbol | tam |
ID | 6269293 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 1538256 |
End bp | 1538987 |
Gene Length | 732 bp |
Protein Length | 243 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 641725771 |
Product | trans-aconitate 2-methyltransferase |
Protein accession | YP_001880269 |
Protein GI | 187731399 |
COG category | [R] General function prediction only |
COG ID | [COG4106] Trans-aconitate methyltransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.00892197 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCACTTTT CCGCTGAACG ATCGCGTCCG GCGGTGGAGC TGCTTGCCAG AGTGCCGCTG GAAAATGTCG AATATGTCGC CGATCTTGGC TGTGGCCCAG GTAACAGCAC CGCCCTTCTA CAACAACGTT GGCCTGCGGC CAGGATAACA GGCATCGACT CGTCTCCGGC GATGATTGCT GAAGCGCGCA GTGCTTTGCC AGACTGCCAG TTCGTGGAAG CAGACATCCG CAACTGGCAA CCGGTACAGG CACTCGATCT GATTTTTGCT AATGCCTCAC TGCAATGGCT GCCTGACCAC TACGAATTGT TTCCTCACTT GGTTTCTTTA CTTAATCCGC AGGGCGTGCT GGCAGTACAG ATGCCAGATA ACTGGCTGGA GCCGACCCAT GTGCTCATGC GCGAAGTTGC CTGGGAACAA AACTACCCGG ATCGCGGGCG TGAGCCGTTG GCTGGCGTTC ATGCTTACTA CGATATTTTG AGCGAAGCCG GATGTGAGGT CGATATCTGG CGAACCACCT ACTATCACCA GATGCCGTCG CACCAGGCGA TTATCGATTG GGTGACCGCC ACTGGATTAC GTCCGTGGTT ACAGGATCTG ACCGAGAGCG AACAGCAGCT TTTTCTTAAG CGCTACCATC AGATGCTGGA AGAGCAGTAT CCACTGCAAG AGAACGGACA GATACTGCTG GCATTTCCGC GTCTTTTTAT TGTTGCCCGG CGTATGGAGT AA
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Protein sequence | MHFSAERSRP AVELLARVPL ENVEYVADLG CGPGNSTALL QQRWPAARIT GIDSSPAMIA EARSALPDCQ FVEADIRNWQ PVQALDLIFA NASLQWLPDH YELFPHLVSL LNPQGVLAVQ MPDNWLEPTH VLMREVAWEQ NYPDRGREPL AGVHAYYDIL SEAGCEVDIW RTTYYHQMPS HQAIIDWVTA TGLRPWLQDL TESEQQLFLK RYHQMLEEQY PLQENGQILL AFPRLFIVAR RME
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