| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E1633 |
|---|
| Symbol | hrpA |
|---|
| ID | 6271790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | + |
|---|
| Start bp | 1486110 |
|---|
| End bp | 1490012 |
|---|
| Gene Length | 3903 bp |
|---|
| Protein Length | 1300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641725722 |
|---|
| Product | ATP-dependent RNA helicase HrpA |
|---|
| Protein accession | YP_001880221 |
|---|
| Protein GI | 187730575 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1643] HrpA-like helicases |
|---|
| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAAC AACAAAAATT GACCTTTACT GCTTTGCAGC AGCGGCTGGA TTCGTTGATG
CTGCGCGACA GACTGCGTTT TTCTCGCCGT CTGCATGGTG TTAAGAAGGT TAAAAATCCT
GATGCACAAC AGGACATTTT CCAGGAGATG GCGAAAGAGA TTGACCCGGC GGCAGGGAAA
GTCCTGCTGC GTGAAGCGGC ACGACCGGAA ATCACTTATC CGGACAATTT GCCAGTTAGT
CAGAAAAAAC AGGATATTCT CGAAGCGATT CGTGATCACC AGGTGGTGAT CGTCGCCGGG
GAAACCGGTT CCGGTAAAAC GACCCAGCTA CCGAAAATCT GTATGGAGCT GGGGCGCGGG
ATTAAAGGAC TGATCGGCCA TACCCAGCCG CGTCGTCTGG CGGCAAGAAC GGTGGCGAAC
CGTATTGCGG AAGAGCTGAA AACGGAGCCA GGCGGTTGCA TCGGTTACAA AGTGCGTTTC
AGCGATCACG TAAGTGATAA CACGATGGTC AAGCTGATGA CCGACGGTAT CCTGCTGGCG
GAGATCCAGC AAGACCGCCT GCTGATGCAG TACGACACCA TCATTATTGA CGAAGCACAC
GAACGCAGCC TGAATATCGA TTTTCTGCTC GGCTATTTGA AAGAGTTGCT GCCGCGGCGT
CCTGACCTAA AAATCATTAT CACTTCCGCG ACTATCGACC CGGAACGCTT TTCTCGCCAC
TTTAATAATG CGCCGATTAT CGAAGTCTCC GGTCGGACCT ATCCGGTGGA AGTGCGCTAT
CGCCCGATTG TTGAAGAAGC CGATGACACC GAGCGCGATC AGTTGCAGGC GATTTTTGAC
GCCGTAGACG AACTGAGCCA GGAAAGCCCT GGCGACATTC TGATCTTTAT GAGCGGCGAG
CGGGAAATTC GCGATACCGC CGATGCGCTG AACAAGCTGA ACTTACGCCA TACCGAAATC
TTGCCGCTTT ATGCGCGGCT TTCGAATAGC GAACAGAACC GCGTGTTCCA GTCGCACAGC
GGGCGACGCA TTGTGCTGGC GACCAACGTC GCGGAAACCT CGCTGACTGT ACCGGGGATT
AAATACGTTA TCGACCCCGG TACGGCGCGT ATCAGCCGCT ACAGCTATCG CACCAAAGTG
CAGCGTTTGC CGATTGAACC CATTTCACAG GCGTCTGCCA ATCAGCGTAA AGGCCGTTGT
GGTCGTGTGT CCGAAGGGAT CTGTATTCGT CTCTATTCCG AAGACGATTT CCTCTCGCGC
CCGGAGTTTA CCGATCCGGA GATTCTGCGT ACCAACCTGG CCTCGGTTAT TTTGCAGATG
ACCGCGCTGG GGCTGGGCGA TATCGCTGCG TTCCCGTTTG TCGAAGCACC GGATAAACGC
AATATCCAGG ATGGCGTGCG TCTGCTCGAA GAACTGGGCG CGATCACCAC GGATGAACAG
GCCAGCGCCT ATAAACTGAC GCCGCTCGGT CGCCAGCTCT CGCAACTGCC GGTCGATCCT
CGTCTGGCGC GTATGGTGCT GGAAGCGCAG AAACATGGCT GCGTGCGTGA GGCGATGATT
ATCACGTCCG CGCTCTCCAT TCAGGACCCG CGTGAGCGGC CGATGGACAA ACAGCAGGCA
TCGGACGAAA AACATCGTCG CTTCCACGAC AAAGAATCCG ACTTCCTCGC GTTTGTAAAT
CTGTGGAATT ATCTTGGCGA GCAGCAAAAG GCGCTTTCTT CAAACGCCTT CCGTCGCCTG
TGTCGTACCG ATTATCTCAA CTATCTGCGC GTGCGCGAAT GGCAGGATAT CTACACCCAG
TTGCGTCAGG TGGTGAAAGA ACTTGGCATT CCGGTTAACA GCGAACCGGC GGAGTATCGC
GAAATTCACA TTGCGTTGCT GACGGGTTTA CTTTCCCATA TCGGCATGAA AGATGCCGAT
AAACAAGAAT ATACCGGCGC ACGTAACGCG CGTTTCTCCA TCTTCCCCGG TTCTGGTTTA
TTCAAAAAAC CGCCGAAATG GGTAATGGTG GCGGAACTGG TAGAAACCAG CCGCCTGTGG
GGGCGCATTG CTGCGCGTAT CGACCCGGAA TGGGTGGAGC CTGTCGCTCA GCATTTGATT
AAACGTACCT ACAGCGAACC GCACTGGGAA CGGGCGCAGG GCGCGGTGAT GGCAACGGAA
AAAGTCACTG TTTATGGTTT GCCGATTGTT GCAGCGCGCA AGGTCAACTA CAGCCAGATC
GATCCGGCGT TATGTCGTGA ACTCTTTATT CGCCATGCGC TGGTGGAAGG TGACTGGCAG
ACGCGTCACG CATTCTTCCG TGAAAACCTG AAACTGCGGG CCGAAGTGGA AGAGCTGGAA
CACAAATCAC GTCGCCGCGA TATTCTGGTT GATGACGAAA CGCTGTTTGA GTTCTACGAC
CAGCGCATCA GCCACGATGT AATCTCCGCT CGTCACTTCG ATAGCTGGTG GAAAAAAGTC
AGCCGCGAAA CGCCTGATTT GCTCAACTTT GAAAAGAGCA TGTTGATCAA AGAAGGGGCG
GAAAAAATCA GCAAGCTGGA TTACCCGAAC TTCTGGCATC AGGGCAATCT CAAGCTGCGT
TTGAGCTATC AGTTTGAGCC AGGCGCAGAC GCGGACGGTG TGACCGTACA TATTCCGCTG
CCGTTACTTA ACCAGGTTGA GGAAAGCGGG TTTGAATGGC AGATCCCCGG TCTGCGCCGC
GAATTGGTGA TTGCTCTGAT TAAATCGTTG CCGAAACCGG TACGCCGTAA TTTTGTGCCT
GCACCAAACT ACGCCGAAGC GTTTTTAGGC CGCGTCACAC CGCTGGAGTT ACCGTTGCTC
GACAGCCTTG AGCGCGAGTT ACGGCGGATG ACCGGCGTTA CCGTTGACCG CGAAGACTGG
CACTGGGATC AGGTGCCCGA TCACCTGAAA ATCACCTTCC GCGTGGTGGA TGACAAAAAC
AAGAAGCTAA AAGAAGGGCG CTCGCTACAA GATCTGAAAG ATGCGCTGAA AGGCAAAGTG
CAGGAAACGC TGTCCGCGGT GGCGGATGAC GGTATCGAGC AGAGCGGCTT ACATATCTGG
AGTTTTGGTC AGCTGCCGGA AAGTTACGAA CAGAAGCGTG GCAACTATAA AGTGAAGGCG
TGGCCGGCGC TGGTGGATGA ACGCGACAGC GTGGCGATCA AACTGTTTGA TAACCCGCTG
GAGCAAAAAC AGGCAATGTG GAATGGTCTT CGCCGTCTAC TGCTGCTAAA TATTCCCTCG
CCGATCAAGT ATTTACATGA AAAGTTACCG AACAAAGCCA AGCTGGGACT GTACTTCAAC
CCGTATGGCA AAGTGCTGGA GCTGATCGAC GACTGTATCT CCTGCGGTGT GGATCAACTG
ATCGACGCCA ATGGTGGCCC GGTCTGGACG GAAGAAGGCT TTGCTGCGCT GCATGAGAAA
GTGCGTGCCG AACTGAACGA CACGGTGGTA GATATTGCGA AGCAGGTCGA GCAAATTCTT
ACGGCAGTGT TCAATATCAA CAAACGTCTG AAAGGGCGGG TGGATATGAC CATGGCACTG
GGGCTTTCTG ACATTAAAGC GCAGATGGGC GGGTTGGTAT ATCGCGGTTT TGTCACTGGT
AACGGCTTCA AACGGCTGGG CGACACGCTG CGATATTTGC AGGCGATTGA AAAACGACTG
GAAAAACTGG CGGTTGATCC ACATCGCGAT CGTGCACAGA TGCTGAAAGT CGAAAACGTC
CAGCAGGCGT GGCAGCAATG GATCAACAAA CTGCCGCCTG CACGTCGTGA GGATGAAGAC
GTGAAAGAGA TCCGTTGGAT GATAGAAGAG CTGCGCGTTA GTTACTTCGC TCAACAACTT
GGTACGCCTT ATCCGATTTC AGATAAGCGT ATTTTGCAGG CGATGGAGCA GATTAGCGGT
TAA
|
|---|
| Protein sequence | MTEQQKLTFT ALQQRLDSLM LRDRLRFSRR LHGVKKVKNP DAQQDIFQEM AKEIDPAAGK
VLLREAARPE ITYPDNLPVS QKKQDILEAI RDHQVVIVAG ETGSGKTTQL PKICMELGRG
IKGLIGHTQP RRLAARTVAN RIAEELKTEP GGCIGYKVRF SDHVSDNTMV KLMTDGILLA
EIQQDRLLMQ YDTIIIDEAH ERSLNIDFLL GYLKELLPRR PDLKIIITSA TIDPERFSRH
FNNAPIIEVS GRTYPVEVRY RPIVEEADDT ERDQLQAIFD AVDELSQESP GDILIFMSGE
REIRDTADAL NKLNLRHTEI LPLYARLSNS EQNRVFQSHS GRRIVLATNV AETSLTVPGI
KYVIDPGTAR ISRYSYRTKV QRLPIEPISQ ASANQRKGRC GRVSEGICIR LYSEDDFLSR
PEFTDPEILR TNLASVILQM TALGLGDIAA FPFVEAPDKR NIQDGVRLLE ELGAITTDEQ
ASAYKLTPLG RQLSQLPVDP RLARMVLEAQ KHGCVREAMI ITSALSIQDP RERPMDKQQA
SDEKHRRFHD KESDFLAFVN LWNYLGEQQK ALSSNAFRRL CRTDYLNYLR VREWQDIYTQ
LRQVVKELGI PVNSEPAEYR EIHIALLTGL LSHIGMKDAD KQEYTGARNA RFSIFPGSGL
FKKPPKWVMV AELVETSRLW GRIAARIDPE WVEPVAQHLI KRTYSEPHWE RAQGAVMATE
KVTVYGLPIV AARKVNYSQI DPALCRELFI RHALVEGDWQ TRHAFFRENL KLRAEVEELE
HKSRRRDILV DDETLFEFYD QRISHDVISA RHFDSWWKKV SRETPDLLNF EKSMLIKEGA
EKISKLDYPN FWHQGNLKLR LSYQFEPGAD ADGVTVHIPL PLLNQVEESG FEWQIPGLRR
ELVIALIKSL PKPVRRNFVP APNYAEAFLG RVTPLELPLL DSLERELRRM TGVTVDREDW
HWDQVPDHLK ITFRVVDDKN KKLKEGRSLQ DLKDALKGKV QETLSAVADD GIEQSGLHIW
SFGQLPESYE QKRGNYKVKA WPALVDERDS VAIKLFDNPL EQKQAMWNGL RRLLLLNIPS
PIKYLHEKLP NKAKLGLYFN PYGKVLELID DCISCGVDQL IDANGGPVWT EEGFAALHEK
VRAELNDTVV DIAKQVEQIL TAVFNINKRL KGRVDMTMAL GLSDIKAQMG GLVYRGFVTG
NGFKRLGDTL RYLQAIEKRL EKLAVDPHRD RAQMLKVENV QQAWQQWINK LPPARREDED
VKEIRWMIEE LRVSYFAQQL GTPYPISDKR ILQAMEQISG
|
|---|
| |