Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E1621 |
Symbol | |
ID | 6271573 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 1478498 |
End bp | 1479160 |
Gene Length | 663 bp |
Protein Length | 220 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641725711 |
Product | IS1 transposase orfB |
Protein accession | YP_001880210 |
Protein GI | 187732084 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1662] Transposase and inactivated derivatives, IS1 family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 50 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGCGCC AGTGCACGCA TTATGGGCGT TGGCCTCAAC ACGGTTTTAC GTCACTTAAA AAACTCAGGC CACAGTCGGT AACCTCGCGC ATACAACCGG GCAGTGATGT GATTGTCTGC GCTGAAATGG ACGAACAGTG GGGCTACGTC GGTGCTAAAT CACGTCAGCG CTGGCTGTTT TACGCGTATG ACAGGATACG GAGGACGGTT GTGGCGCACG TCTTCGGTGA ACGCACTCTG GCCACACTGG AGCGTCTTCT GAGCCTGCTG TCGGCCTTTG AGGTCGTGGT ATGGATGACG GATGGCTGGC CGCTGTATGA ATCACGCCTG AAGGGAAAGC TGCACGTTAT CAGCAAGCGT TACACTCAGC GCATTGAGCG ACATAATCTG AATCTGAGAC AACATCTGGC AAGGCTGGGA CGGAAGTCAC TGTCGTTCTC AAAATCGGTG GAGCTGCATG ACAAGGTCAT CGGGCATTAT CTGACTATCA GTAAGTTGGA GTCATTACCA ATTTTCGTAC CCATTTACCG TTTATCCCTT GTACATATTC CCCCGGTTTG GCCCGAGCTA CGAGCTTTTG CCCGGCGAGT TTCGCGATAT CATCTACAGA CACATTATTT TGCTTTGCCA GTTGTTGGTA ACTCGCTTTA CGTTCGGCAT TAA
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Protein sequence | MSRQCTHYGR WPQHGFTSLK KLRPQSVTSR IQPGSDVIVC AEMDEQWGYV GAKSRQRWLF YAYDRIRRTV VAHVFGERTL ATLERLLSLL SAFEVVVWMT DGWPLYESRL KGKLHVISKR YTQRIERHNL NLRQHLARLG RKSLSFSKSV ELHDKVIGHY LTISKLESLP IFVPIYRLSL VHIPPVWPEL RAFARRVSRY HLQTHYFALP VVGNSLYVRH
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