| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E1615 |
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| Symbol | ydbK |
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| ID | 6270099 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | - |
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| Start bp | 1469709 |
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| End bp | 1473233 |
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| Gene Length | 3525 bp |
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| Protein Length | 1174 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641725706 |
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| Product | pyruvate-flavodoxin oxidoreductase |
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| Protein accession | YP_001880205 |
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| Protein GI | 187733332 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0674] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit
[COG1013] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit
[COG1014] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit |
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| TIGRFAM ID | [TIGR02176] pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTACTA TTGACGGTAA TGGCGCGGTT GCTTCGGTGG CGTTTCGCAC CAGTGAAGTT
ATCGCCATCT ACCCTATTAC CCCCAGTTCC ACGATGGCAG AACAGGCTGA TGCCTGGGCC
GGAAACGGCT TGAAGAACGT TTGGGGAGAC ACACCACGCG TGGTTGAAAT GCAGTCGGAA
GCGGGTGCTA TCGCTACCGT GCATGGCGCT TTGCAGACGG GTGCCCTTTC AACATCGTTT
ACGTCATCGC AGGGTTTGCT GCTGATGATC CCGACACTGT ACAAACTGGC AGGCGAACTC
ACACCGTTTG TCCTGCATGT AGCGGCACGT ACCGTTGCCA CACATGCACT CTCTATTTTT
GGCGATCATT CCGACGTCAT GGCGGTGCGC CAGACGGGTT GCGCGATGTT GTGTGCGGCA
AACGTCCAGG AAGCGCAAGA CTTTGCTCTC ATTTCGCACA TCGCGACGCT GAAAAGCCGC
GTGCCATTTA TTCATTTCTT TGATGGTTTC CGCACGTCCC ACGAAATCAA TAAAATTGTC
CCGCTGGCCG ATGACACGAT TCTTGATCTC ATGCCGCAGG CCGAAATTGA TGCTCATCGC
GCCCGGGCGC TCAACCCGGA ACATCCGGTG ATCCGTGGTA CGTCCGCCAA TCCTGACACT
TATTTCCAGT CTCGCGAAGC CACCAACCCC TGGTACAACG CAGTCTATGA CCATGTTGAA
CAGGCGATGA ATGATTTCTC TGCCGCGACA GGTCGTCAGT ATCAGCCGTT TGAATATTAC
GGGCATCCGC AAGCTGAACG GGTGATTATC CTGATGGGCT CAGCCATTGG CACCTGTGAA
GAAGTGGTTG ATGAATTGCT AACCCGTGGC GAAAAAGTCG GCGTGCTGAA AGTTCGCCTG
TACCGCCCCT TCTCAGCCAA ACACTTGCTA CAAACTCTAC CGGGATCCGT ACGCAGCGTG
GCGGTACTGG ACAGAACCAA AGAACCCGGT GCCCAGGCAG AACCGCTCTA TCTGGATGTG
ATGACCGCAC TGGCAGAAGC CTTTAATAAT GGCAAGCGCG AAACTCTGCC CCGTGTCATT
GGTGGGCGCT ATGGTCTTTC ATCCAAAGAA TTTGGCCCGG ACTGTGTACT GGCGGTATTT
GCCGAGCTCA ACGCGGCTAA ACCGAAAGCG CGCTTTACGG TTGGTATTTA CGATGATGTA
ACCAATCTGT CCCTGCCGTT GCCGGAAAAC ACCCAGCCAA ACTCGGCGAA ACTTGAAGCC
TTGTTTTATG GCCTTGGTAG TGATGGCAGC GTTTCCGCGA CCAAAAACAA TATCAAGATT
ATCGGTAATT CCACGCCGTG GTACGCACAG GGCTATTTTG TTTACGACTC CAAAAAAGCG
GGCGGCCTGA CGGTTTCTCA CCTTCGCGTG AGCGAACAGC CGATTCGTTC CGCTTATCTC
ATTTCCCAGG CTGATTTTGT TGGCTGCCAC CAGTTGCAGT TTATCGATAA ATATCAGATG
GCTGAGCGTT TAAAACCTGG CGGCACTTTC CTGCTCAACA CGCCGTACAG CGCAGATGAA
GTGTGGTCGC GCTTGCCGCA AGAAGTTCAG GCCGTGTTAA ACCAGAAAAA AGCGCGCTTC
TATGTGATTA ACGCGGCGAA AATCGCCCGC GAATGTGGCC TGGCGGCCCG TATTAATACC
GTCATGCAGA TGGCTTTTTT CCATCTGACG CAAATTCTGC CTGGCGATAG CGCCCTCGCA
GAATTGCAGG GTGCGATTGC CAAAAGTTAC AGTAGCAAAG GCCAGGATCT GGTGGAAGGC
AACTGGCAGG CTCTGGCGCT GGCGCGTGAA TCCGTAGAAG AAGTTCCGTT GCAACCGGTA
AATCCGCACA GCGCCAATCG ACCGCCAGTG GTTTCCGATG CCGCCCCTGA TTTCGTGAAA
ACCGTAACCG CAGCGATGCT CGCAGGGCTT GGTGATGCCC TCCCCGTTTC GGCGCTGCCG
CCAGACGGCA CCTGGCCGAT GGGGACCACT CGCTGGGAAA AACGCAATAT CGCCGAAGAG
ATCCCCATCT GGAAAGAGGA ACTCTGTACC CAATGTAACC ACTGCGTCGC CGCTTGCCCA
CACTCAGCTA TTCGCGCAAA AGTGGTACCA CCCGAAGCGA TGGAAAACGC CCCTGCCAGC
CTGCATTCGC TGGATGTGAA ATCGCGTGAT ATGCGCGGGC AGAAATATGT CTTGCAGGTG
GCTCCGGAAG ATTGCACCGG TTGTAACCTG TGCGTCGAAG TTTGCCCGGC GAAAGACCGT
CAGAATCCAG AGATTAAAGC CATCAATATG ATGTCGCGCC TGGAACATGT CGAAGAAGAG
AAAATCAATT ACGATTTCTT CCTCAACCTG CCAGAAATCG ACCGTAGCAA ACTGGAACGT
ATTGATATTC GTACATCGCA GCTGATTACA CCGCTGTTTG AATATTCCGG TGCTTGCTCC
GGTTGTGGCG AGACGCCGTA TATTAAATTG CTGACTCAGC TCTATGGCGA CCGGATGTTG
ATCGCTAACG CCACCGGCTG TTCTTCAATT TATGGCGGTA ACCTGCCCTC TACACCGTAT
ACCACCGATG CCAACGGTCG TGGGCCGGCA TGGGCGAACT CTCTATTTGA AGATAATGCC
GAATTTGGCC TTGGTTTCCG CCTGACGGTC GATCAACACC GTGTCCGCGT GCTGCGTCTG
CTGGATCAAT TTGCCGATAA AATCCCGGCG GAATTACTGA CGGCGTTGAA ATCAGACGCT
ACGCCAGAGG TTCGTCGAGA ACAGATCGCA GCTTTACGCC AGCAACTCAA CGATGTTGCC
GAAGCACATG AACTGCTACG TGATGCAGAT GCACTGGTGG AAAAATCAAT CTGGCTGATT
GGTGGTGATG GCTGGGCTTA CGATATCGGC TTTGGCGGTC TGGATCATGT ATTGAGTTTG
ACGGAAAACG TCAACATTCT GGTGCTGGAT ACGCAATGCT ATTCCAACAC CGGTGGTCAG
GCGTCGAAAG CGACACCGCT GGGTGCAGTA ACTAAATTTG GCGAGCACGG CAAACGTAAA
GCGCGTAAAG ATCTTGGCGT CAGTATGATG ATGTACGGTC ATGTTTATGT GGCGCAGATT
TCTCTCGGCG CGCAGCTGAA CCAGACGGTG AAAGCGATTC AGGAAGCGGA AGCGTATCCG
GGACCATCGC TGATCATTGC TTATAGCCCG TGTGAAGAGC ATGGTTACGA TCTGGCACTC
AGCCATGACC AGATGCGCCA ACTCACAGCT ACCGGCTTCT GGCCGCTATA TCGCTTCGAT
CCTCGTCGTG CCGATGAAGG CAAACTGCCG CTGGCGCTGG ATTCACGCCC GCCGTCAGAA
GCACTGGAAG AAACGTTACT TCACGAGCAA CGTTTCCGTC GTCTGAATTC GCAGCAGCCA
GAAGTGGCAG AACAGTTATG GAAAGATGCT GCAGCTGATT TGCAAAAACG CTATGACTTC
CTGGCACAAA TGGCCGGAAA AGCGGAAAAA AGCAACACCG ATTAA
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| Protein sequence | MITIDGNGAV ASVAFRTSEV IAIYPITPSS TMAEQADAWA GNGLKNVWGD TPRVVEMQSE
AGAIATVHGA LQTGALSTSF TSSQGLLLMI PTLYKLAGEL TPFVLHVAAR TVATHALSIF
GDHSDVMAVR QTGCAMLCAA NVQEAQDFAL ISHIATLKSR VPFIHFFDGF RTSHEINKIV
PLADDTILDL MPQAEIDAHR ARALNPEHPV IRGTSANPDT YFQSREATNP WYNAVYDHVE
QAMNDFSAAT GRQYQPFEYY GHPQAERVII LMGSAIGTCE EVVDELLTRG EKVGVLKVRL
YRPFSAKHLL QTLPGSVRSV AVLDRTKEPG AQAEPLYLDV MTALAEAFNN GKRETLPRVI
GGRYGLSSKE FGPDCVLAVF AELNAAKPKA RFTVGIYDDV TNLSLPLPEN TQPNSAKLEA
LFYGLGSDGS VSATKNNIKI IGNSTPWYAQ GYFVYDSKKA GGLTVSHLRV SEQPIRSAYL
ISQADFVGCH QLQFIDKYQM AERLKPGGTF LLNTPYSADE VWSRLPQEVQ AVLNQKKARF
YVINAAKIAR ECGLAARINT VMQMAFFHLT QILPGDSALA ELQGAIAKSY SSKGQDLVEG
NWQALALARE SVEEVPLQPV NPHSANRPPV VSDAAPDFVK TVTAAMLAGL GDALPVSALP
PDGTWPMGTT RWEKRNIAEE IPIWKEELCT QCNHCVAACP HSAIRAKVVP PEAMENAPAS
LHSLDVKSRD MRGQKYVLQV APEDCTGCNL CVEVCPAKDR QNPEIKAINM MSRLEHVEEE
KINYDFFLNL PEIDRSKLER IDIRTSQLIT PLFEYSGACS GCGETPYIKL LTQLYGDRML
IANATGCSSI YGGNLPSTPY TTDANGRGPA WANSLFEDNA EFGLGFRLTV DQHRVRVLRL
LDQFADKIPA ELLTALKSDA TPEVRREQIA ALRQQLNDVA EAHELLRDAD ALVEKSIWLI
GGDGWAYDIG FGGLDHVLSL TENVNILVLD TQCYSNTGGQ ASKATPLGAV TKFGEHGKRK
ARKDLGVSMM MYGHVYVAQI SLGAQLNQTV KAIQEAEAYP GPSLIIAYSP CEEHGYDLAL
SHDQMRQLTA TGFWPLYRFD PRRADEGKLP LALDSRPPSE ALEETLLHEQ RFRRLNSQQP
EVAEQLWKDA AADLQKRYDF LAQMAGKAEK SNTD
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