| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E1588 |
|---|
| Symbol | dbpA |
|---|
| ID | 6270108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | + |
|---|
| Start bp | 1448732 |
|---|
| End bp | 1450105 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641725679 |
|---|
| Product | ATP-dependent RNA helicase DbpA |
|---|
| Protein accession | YP_001880183 |
|---|
| Protein GI | 187731861 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 46 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCGCTT TTTCTACCCT GAATGTTTTG CCTCCCGCCC AACTCACGAA CCTTAATGAG
TTGGGTTATT TAACTATGAC GCCGGTGCAG GCCGCCACGC TTCCGGCGAT CCTTGCCGGA
AAAGATGTTC GCGTGCAGGC GAAAACCGGC AGCGGCAAAA CGGCGGCTTT TGGCCTCGGC
TTGTTACAGC AAATTGATGC GTCGCTATTT CAAACCCAGG CTTTAGTGCT GTGTCCTACG
CGTGAACTGG CGGATCAGGT GGCAGGTGAA TTGCGTCGGC TGGCGCGTTT TCTGCCAAAT
ACCAAAATTT TGACGTTGTG CGGTGGTCAA CCGTTCGGTA TGCAGCGTGA TTCGTTGCAA
CATGCGCCGC ATATTATCGT GGCAACGCCG GGTCGTTTGC TGGATCACTT GCAAAAAGGC
ACGGTATCAC TGGATGCGCT GAATACTTTG GTGATGGATG AGGCCGACCG CATGCTGGAT
ATGGGATTTA GCGATGCCAT TGATGATGTC ATCCGTTTTG CGCCTGCATC TCGACAGACG
CTTCTGTTTT CGGCAACCTG GCCGGAAGCC ATCGCCGTAA TCAGCGGACG AGTGCAACGC
GATCCTTTGG CGATTGAAAT TGACTCAACA GATGCTTTGC CACCCATTGA ACAACAATTT
TATGAGACAT CCAGCAAAGG CAAAATTCCT CTGTTGCAAC GGTTATTAAG CTTGCATCAG
CCATCCTCTT GCGTGGTGTT TTGCAATACC AAAAAAGATT GCCAGGCTGT CTGCGACGCG
CTGAATGAAG TAGGGCAAAG TGCATTGTCA TTACACGGCG ATTTGGAGCA ACGCGATCGC
GATCAGACCC TGGTACGTTT TGCTAACGGT AGCGCCCGTG TACTGGTTGC GACTGATGTT
GCTGCGCGTG GTCTGGATAT TAAATCGCTT GAGCTGGTGG TGAACTTTGA GCTGGCGTGG
GACCCTGAAG TTCATGTACA TCGCATCGGC CGTACAGCTC GTGCAGGAAA TAGCGGTCTG
GCGATCAGTT TCTGTGCTCC GGAAGAAGCA CAGCGGGCCA ATATCATTTC TGACATGTTG
CAGATAAAAC TTAACTGGCA AACGCCGCCA GCTAATAGTT CCATTGTGCC GCTGGAAGCA
GAAATGGCAA CGTTGTGTAT CGATGGCGGG AAAAAAGCCA AAATGCGCCC GGGTGATGTA
TTAGGTGCAC TGACAGGAGA TATCGGGCTT GATGGCGCAG ATATTGGCAA AATCGCCGTG
CATCCGGCGC ATGTCTATGT CGCGGTCCGT CAGGCTGTTG CTCATAAAGC ATGGAAACAG
TTACAGGGCG GGAAGATTAA AGGAAAAACG TGCCGGGTGC GGTTATTAAA ATAA
|
|---|
| Protein sequence | MTAFSTLNVL PPAQLTNLNE LGYLTMTPVQ AATLPAILAG KDVRVQAKTG SGKTAAFGLG
LLQQIDASLF QTQALVLCPT RELADQVAGE LRRLARFLPN TKILTLCGGQ PFGMQRDSLQ
HAPHIIVATP GRLLDHLQKG TVSLDALNTL VMDEADRMLD MGFSDAIDDV IRFAPASRQT
LLFSATWPEA IAVISGRVQR DPLAIEIDST DALPPIEQQF YETSSKGKIP LLQRLLSLHQ
PSSCVVFCNT KKDCQAVCDA LNEVGQSALS LHGDLEQRDR DQTLVRFANG SARVLVATDV
AARGLDIKSL ELVVNFELAW DPEVHVHRIG RTARAGNSGL AISFCAPEEA QRANIISDML
QIKLNWQTPP ANSSIVPLEA EMATLCIDGG KKAKMRPGDV LGALTGDIGL DGADIGKIAV
HPAHVYVAVR QAVAHKAWKQ LQGGKIKGKT CRVRLLK
|
|---|
| |