Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E1582 |
Symbol | abgR |
ID | 6273116 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 1441513 |
End bp | 1442421 |
Gene Length | 909 bp |
Protein Length | 302 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641725671 |
Product | putative DNA-binding transcriptional regulator |
Protein accession | YP_001880177 |
Protein GI | 187731383 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 41 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCTTTTC AGGTAAAAAT TCATCAAATT CGTGCTTTTG TTGAAGTGGC TCGTCAGGGC AGCATTCGCG GAGCGAGCCG AATGTTGAAT ATGTCGCAAC CGGCACTGAG TAAATCTATT CAGGAGTTGG AAGAAGGATT AGCGGCGCAA CTCTTTTTTC GCCGTAGTAA AGGCGTGACG TTAACTGATG CCGGTGAAAG TTTTTATCAG CACGCCAGTC TTATTCTTGA AGAGCTGCGC GCAGCCCAAG AGGATATTCG CCAACGACAA GGGCAACTGG CAGGGCAGAT TAATATCGGC ATGGGGGCCA GTATTTCCCG CAGTCTGATG CCAGCTGTCA TATCTCGTTT TCATCAGCAG CATCCGCAGG TAAAAGTACG CATTATGGAA GGGCAACTGG TGTCGATGAT TAATGAATTG CGTCAGGGAG AATTGGATTT CACCATCAAT ACCTATTATC AGGGACCGTA CGACCACGAA TTTACTTTTG AGAAATTACT GGAAAAGCAA TTCGCGATCT TTTGCCGCCC GGGACACCCC GCCATTGGTG CCCGTTCGAT CAAACAGTTA CTGGATTACA GCTGGACAAT GCCGACGCCA CACGGCAGTT ACTACAAACA GTTGAGTGAA TTGCTTGACG ATCAGGCGCA AACGCCACAG GTCGGTGTAG TCTGCGAGAC GTTCTCAGCC TGTATCAGTC TGGTGGCAAA AAGCGATTTT CTCAGCATAC TGCCTGAAGA AATGGGCTGC GATCCCTTGC ACGGACAGGG GCTGGTGATG TTGCCGGTTA GCGAAATTTT ACCGAAAGCG GCCTATTATT TGATTCAGCG GCGTGATAGT CGCCAGACAC CACTGACCCC GTCATTAATC ACGCAATTCC GGCGAGAATG CGGCTATCTG CAAAGTTAA
|
Protein sequence | MAFQVKIHQI RAFVEVARQG SIRGASRMLN MSQPALSKSI QELEEGLAAQ LFFRRSKGVT LTDAGESFYQ HASLILEELR AAQEDIRQRQ GQLAGQINIG MGASISRSLM PAVISRFHQQ HPQVKVRIME GQLVSMINEL RQGELDFTIN TYYQGPYDHE FTFEKLLEKQ FAIFCRPGHP AIGARSIKQL LDYSWTMPTP HGSYYKQLSE LLDDQAQTPQ VGVVCETFSA CISLVAKSDF LSILPEEMGC DPLHGQGLVM LPVSEILPKA AYYLIQRRDS RQTPLTPSLI TQFRRECGYL QS
|
| |