Gene SbBS512_E1539 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E1539 
SymbolpspF 
ID6270025 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand- 
Start bp1408387 
End bp1409364 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content52% 
IMG OID641725636 
Productphage shock protein operon transcriptional activator 
Protein accessionYP_001880142 
Protein GI187731147 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1221] Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain 
TIGRFAM ID[TIGR02974] psp operon transcriptional activator PspF 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value0.833762 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGAAT ACAAAGATAA TTTACTTGGT GAGGCGAACA GCTTTCTCGA AGTGCTGGAA 
CAGGTTTCGC ATCTCGCACC GCTGGACAAA CCGGTGCTCA TCATCGGCGA ACGCGGCACC 
GGTAAAGAGC TGATTGCCAG CCGCCTGCAT TATCTCTCCT CCCGTTGGCA AGGGCCGTTT 
ATTTCCCTTA ACTGCGCGGC GTTAAATGAA AATCTGCTGG ATTCCGAACT GTTTGGTCAC 
GAAGCGGGGG CGTTTACCGG TGCGCAAAAA CGTCATCCAG GGAGATTTGA ACGTGCCGAC 
GGCGGTACGC TATTTCTTGA TGAACTCGCT ACGGCACCGA TGATGGTGCA GGAGAAATTA 
TTGCGCGTGA TTGAGTACGG TGAACTGGAG CGCGTTGGCG GCAGCCAGCC ATTGCAGGTG 
AATGTGCGGT TGGTATGCGC GACGAATGCC GATCTCCCGG CGACGGTCAA TGAAGGCACT 
TTTCGCGCTG ACCTGCTCGA CCGACTGGCT TTTGATGTTG TACAACTGCC ACCACTGCGC 
GAGCGCGAAA GCGACATAAT GTTGATGGCA GAACACTTTG CCATCCAGAT GTGTCGGGAA 
ATCAAGCTGC CTCTGTTCCC GGGGTTTACG GAGCGCGCCA GAGAAACATT GCTGAATTAT 
CGTTGGCCGG GAAATATTCG TGAATTGAAA AACGTGGTGG AACGTTCAGT GTATCGCCAC 
GGCACCAGCG ATTATCCGCT TGATGACATC ATTATTGATC CCTTTAAACG GCGTCCGCCT 
GAAGACGCTA TCGCCGTTTC AGAAACCACC TCGCTTCCAA CACTGCCGCT GGATTTACGT 
GAGTTTCAGA TGCAGCAGGA AAAAGAGTTG CTGCAACTCA GTTTGCAACA AGGGAAATAT 
AACCAGAAGC GCGCGGCTGA ATTACTGGGG TTAACTTATC ATCAGTTCCG CGCGTTGTTG 
AAAAAGCACC AGATTTAG
 
Protein sequence
MAEYKDNLLG EANSFLEVLE QVSHLAPLDK PVLIIGERGT GKELIASRLH YLSSRWQGPF 
ISLNCAALNE NLLDSELFGH EAGAFTGAQK RHPGRFERAD GGTLFLDELA TAPMMVQEKL 
LRVIEYGELE RVGGSQPLQV NVRLVCATNA DLPATVNEGT FRADLLDRLA FDVVQLPPLR 
ERESDIMLMA EHFAIQMCRE IKLPLFPGFT ERARETLLNY RWPGNIRELK NVVERSVYRH 
GTSDYPLDDI IIDPFKRRPP EDAIAVSETT SLPTLPLDLR EFQMQQEKEL LQLSLQQGKY 
NQKRAAELLG LTYHQFRALL KKHQI