| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E1530 |
|---|
| Symbol | sapA |
|---|
| ID | 6269505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 1396920 |
|---|
| End bp | 1398563 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641725628 |
|---|
| Product | peptide ABC transporter, periplasmic peptide-binding protein |
|---|
| Protein accession | YP_001880134 |
|---|
| Protein GI | 187731281 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.414717 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCAGG TATTATCGTC TCTTTTGGTG ATTGCTGGAC TTGTGAGTGG TCAGGCAATC
GCCGCGCCTG AATCCCCCCC GCATGCTGAT ATCCGCGACA GCGGTTTTGT CTATTGCGTC
AGCGGGCAAG TCAACACCTT TAACCCATCC AAAGCGAGCA GTGGGTTAAT TGTCGATACC
CTTGCCGCCC AGTTTTATGA TCGACTGCTG GATGTCGATC CCTATACCTA TCGCCTGATG
CCGGAACTTG CCGAAAGCTG GGAAGTACTC GACAACGGCG CGACCTATCG CTTCCACCTG
CGTCGCGATG TTCCGTTTCA AAAAACCGAC TGGTTTACTC CCACTCGTAA AATGAATGCC
GACGATGTGG TGTTTACCTT CCAGCGAATT TTTGACCGCA ACAACCCGTG GCATAACGTC
AACGGCAGCA ACTTCCCCTA CTTCGACAGC CTGCAATTTG CCGATAACGT GAAAAGCGTC
CGCAAACTGG ATAATCATAC CGTTGAGTTC CGACTCGCCC AGCCGGATGC TTCTTTTTTG
TGGCACCTCG CAACCCATTA TGCTTCGGTC ATGTCGGCAG AATATGCCCG GAAGTTAGAG
AAAGAAGATC GCCAGGAGCA ACTCGACCGT CAACCGGTCG GCACCGGTCC GTATCAGTTG
TCGGAATACC GCGCCGGGCA ATTTATTCGC CTACAACGTC ATGATGACTT CTGGCGCGGT
AAACCGTTAA TGCCGCAGGT AGTGGTGGAT TTAGGCTCCG GCGGCACCGG ACGTCTGTCG
AAACTCCTGA CCGGGGAATG CGACGTTCTG GCCTGGCCTG CTGCCAGCCA GCTATCCATT
TTGCGTGACG ACCCGCGCTT GCGTTTAACG CTGCGTCCTG GGATGAACGT CGCCTATCTG
GCATTTAACA CCGCCAAACC GCCGCTAAAT AATCCCGCTG TCCGCCATGC ACTGGCACTG
GCGATTAATA ACCAGCGCCT GATGCAATCC ATCTATTATG GTACGGCTGA AACGGCGGCC
TCTATTTTAC CGCGCGCCTC GTGGGCCTAT GACAACGAGG CTAAAATTAC TGAATACAAT
CCGGCGAAAT CGCGCGAACA GTTGAAGGCG TTGGGGCTGG AAAACTTAAC GCTGAAACTG
TGGGTGCCCA CACGTTCGCA GGCGTGGAAC CCCAGTCCAC TGAAAACTGC CGAACTGATT
CAGGCGGATA TGGCGCAGGT TGGCGTAAAA GTGGTGATTG TGCCGGTAGA AGGTCGCTTT
CAGGAGGCGC GGTTGATGGA TATGAGCCAT GATCTGACGT TATCCGGTTG GGCGACGGAC
AGTAACGACC CGGACAGTTT CTTCCGTCCT TTACTGAGCT GTGCGGCAAT TCATTCACAG
ACCAACCTCG CCCACTGGTG CGATCCGAAA TTCGACAGCG TGTTGCGTAA GGCGCTCTCC
TCGCAGCAGC TGGCGGCGCG TATTGAAGCC TATGACGAAG CGCAGAGTAT TCTGGCGCAG
GAATTGCCCA TTTTGCCGCT GGCGTCGTCA TTGCGTTTGC AGGCCTATCG GTACGATATC
AAAGGTCTGG TACTTAGCCC GTTTGGTAAC GCCTCCTTTG CTGGGGTGTA TCGCGAGAAA
CAGGATGAGG TGAAAAAACC ATGA
|
|---|
| Protein sequence | MRQVLSSLLV IAGLVSGQAI AAPESPPHAD IRDSGFVYCV SGQVNTFNPS KASSGLIVDT
LAAQFYDRLL DVDPYTYRLM PELAESWEVL DNGATYRFHL RRDVPFQKTD WFTPTRKMNA
DDVVFTFQRI FDRNNPWHNV NGSNFPYFDS LQFADNVKSV RKLDNHTVEF RLAQPDASFL
WHLATHYASV MSAEYARKLE KEDRQEQLDR QPVGTGPYQL SEYRAGQFIR LQRHDDFWRG
KPLMPQVVVD LGSGGTGRLS KLLTGECDVL AWPAASQLSI LRDDPRLRLT LRPGMNVAYL
AFNTAKPPLN NPAVRHALAL AINNQRLMQS IYYGTAETAA SILPRASWAY DNEAKITEYN
PAKSREQLKA LGLENLTLKL WVPTRSQAWN PSPLKTAELI QADMAQVGVK VVIVPVEGRF
QEARLMDMSH DLTLSGWATD SNDPDSFFRP LLSCAAIHSQ TNLAHWCDPK FDSVLRKALS
SQQLAARIEA YDEAQSILAQ ELPILPLASS LRLQAYRYDI KGLVLSPFGN ASFAGVYREK
QDEVKKP
|
|---|
| |