Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E1517 |
Symbol | |
ID | 6272808 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 1382983 |
End bp | 1384968 |
Gene Length | 1986 bp |
Protein Length | 661 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641725615 |
Product | RNase II stability modulator |
Protein accession | YP_001880121 |
Protein GI | 187732236 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.677881 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAACCG TTAGGGAGTC CACAACGTTG TACAACTTTC TCGGATCGCA CAATCCATAC TGGCGGTTGA CGGAAAGCAG CGATGTTTTG CGCTTTTCTA CCACCGAAAC CACAGAACCT GATCGTACTT TGCAGTTATC TGCCGAACAG GCTGCTCGCA TCAGGGAAAT GACGGTCATC ACCTCCAGCC TGATGATGAG TCTGACCGTC GATGAGAGCG ATCTTTCTGT GCATCTGGTA GGACGAAAAA TCAATAACCG GGAATGGGCT GGCAACGCGT CTGCATGGCA TGACACACCG GCAGTTGCTC GTGATTTATC ACACGGGCTT TCCTTTGCTG AGCAGGTAGT TTCTGAAGCA CATTCCGCAA TAGTGATTCT CGACAGCCGG GGGAATATCC AACGCTTCAA TCGGTTATGT GAAGATTACA CTGGGTTGAA AGAACACGAC GTCATTGGCC AAAGCGTGTT TAAACTGTTT ATGAGCCGTC GTGAAGCTGC GGCATCCAGG CGCAATAACC GTGTATTTTT TCGAAGCGGC AATGCATATA AAGTCGAACT GTGGATACCA ACATGTAAAG GCCAGCGGCT GTTTCTGTTT CGCAATAAAT TTGTCCACAG CGGCAGTGGC AAAAACGAGA TTTTTTTAAT CTGTTCCGGC ACCGACATTA CCGAAGAGCG CCGCGCTCAG GAGCGACTGC GTATTCTGGC AAATACCGAC AGTATCACCG GACTGCCGAA TCGTAACGCA ATGCAGGATT TAATCGATCA CGCTATTAAT CATGCAGATA ACAATAAAGT TGGGGTTGTG TATCTTGATT TGGATAATTT CAAAAAGGTC AACGACGCCT ATGGGCATTT GTTTGGTGAC CAGTTATTAC GCGACGTGTC ATTGGCTATT TTAAGCTGTC TCGAACATGA CCAGGTGTTG GCGCGTCCAG GTGGGGATGA GTTTCTGGTA CTGGCATCCA ACACCTCACA AAGCGCGCTG GAAGCAATGG CATCACGAAT TTTGACCCGC TTACGGCTCC CCTTTCGCAT TGGTTTAATT GAAGTTTATA CCAGCTGTTC AGTAGGTATT GCACTCTCTC CCGAACATGG TTCAGACAGC ACGGCTATTA TTCGTCACGC CGACACAGCA ATGTACACAG CGAAGGAAGG CGGACGAGGA CAATTTTGCG TTTTTACCCC AGAAATGAAT CAACGGGTAT TTGAATATCT CTGGCTGGAT ACCAACTTGC GTAAAGCACT GGAAAACGAT CAGTTGGTTA TTCACTATCA ACCGAAAATC ACCTGGCGTG GCGAAGTGCG CAGTCTGGAA GCACTAGTAC GTTGGCAGTC ACCTGAACGT GGGTTGATTC CACCGTTGGA CTTCATTTCC TACGCCGAAG AGTCAGGGCT AATTGTGCCT TTAGGCCGTT GGGTGATTCT CGATGTCGTA CGCCAGGTGG CAAAGTGGCG GGATAAAGGC ATAAACCTGC GAGTGGCGGT AAATATTTCT GCACGTCAGC TCGCCGATCA AACCATTTTC ACCGCCCTGA AACAGGTTCT CCAGGAACTC AATTTTGAAT ACTGCCCTAT AGATGTTGAA CTGACAGAGA GTTGTCTGAT TGAGAATGAT GAACTGGCAC TGTCTGTTAT TCAACAATTT AGCCAACTAG GTGCGCAAGT GCATCTGGAT GATTTTGGTC CCGGCTACTC TTCACTTTCG CAACTGGCGC GCTTTCCGAT CGATGCCATC AAACTTGACC AGGTTTTTGT TCGAGATATT CACAAACAAC CTGTCTCGCA GTCACTGGTC CGGGCGATCG TCGCTGTGGC CCAGGCATTG AATCTTCAGG TGATCGCCGA AGGTGTAGAG AGTGCAAAGG AAGATGCTTT TTTAACCAAG AACGGGATCA ATGAGCGGCA AGGATTTTTG TTTGCCAAAC CGATGCCCGC CGTCGCCTTC GAACGCTGGT ATAAACGCTA TCTGAAGCGC GCATAA
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Protein sequence | MKTVRESTTL YNFLGSHNPY WRLTESSDVL RFSTTETTEP DRTLQLSAEQ AARIREMTVI TSSLMMSLTV DESDLSVHLV GRKINNREWA GNASAWHDTP AVARDLSHGL SFAEQVVSEA HSAIVILDSR GNIQRFNRLC EDYTGLKEHD VIGQSVFKLF MSRREAAASR RNNRVFFRSG NAYKVELWIP TCKGQRLFLF RNKFVHSGSG KNEIFLICSG TDITEERRAQ ERLRILANTD SITGLPNRNA MQDLIDHAIN HADNNKVGVV YLDLDNFKKV NDAYGHLFGD QLLRDVSLAI LSCLEHDQVL ARPGGDEFLV LASNTSQSAL EAMASRILTR LRLPFRIGLI EVYTSCSVGI ALSPEHGSDS TAIIRHADTA MYTAKEGGRG QFCVFTPEMN QRVFEYLWLD TNLRKALEND QLVIHYQPKI TWRGEVRSLE ALVRWQSPER GLIPPLDFIS YAEESGLIVP LGRWVILDVV RQVAKWRDKG INLRVAVNIS ARQLADQTIF TALKQVLQEL NFEYCPIDVE LTESCLIEND ELALSVIQQF SQLGAQVHLD DFGPGYSSLS QLARFPIDAI KLDQVFVRDI HKQPVSQSLV RAIVAVAQAL NLQVIAEGVE SAKEDAFLTK NGINERQGFL FAKPMPAVAF ERWYKRYLKR A
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