Gene SbBS512_E1517 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E1517 
Symbol 
ID6272808 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp1382983 
End bp1384968 
Gene Length1986 bp 
Protein Length661 aa 
Translation table11 
GC content49% 
IMG OID641725615 
ProductRNase II stability modulator 
Protein accessionYP_001880121 
Protein GI187732236 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.677881 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACCG TTAGGGAGTC CACAACGTTG TACAACTTTC TCGGATCGCA CAATCCATAC 
TGGCGGTTGA CGGAAAGCAG CGATGTTTTG CGCTTTTCTA CCACCGAAAC CACAGAACCT
GATCGTACTT TGCAGTTATC TGCCGAACAG GCTGCTCGCA TCAGGGAAAT GACGGTCATC
ACCTCCAGCC TGATGATGAG TCTGACCGTC GATGAGAGCG ATCTTTCTGT GCATCTGGTA
GGACGAAAAA TCAATAACCG GGAATGGGCT GGCAACGCGT CTGCATGGCA TGACACACCG
GCAGTTGCTC GTGATTTATC ACACGGGCTT TCCTTTGCTG AGCAGGTAGT TTCTGAAGCA
CATTCCGCAA TAGTGATTCT CGACAGCCGG GGGAATATCC AACGCTTCAA TCGGTTATGT
GAAGATTACA CTGGGTTGAA AGAACACGAC GTCATTGGCC AAAGCGTGTT TAAACTGTTT
ATGAGCCGTC GTGAAGCTGC GGCATCCAGG CGCAATAACC GTGTATTTTT TCGAAGCGGC
AATGCATATA AAGTCGAACT GTGGATACCA ACATGTAAAG GCCAGCGGCT GTTTCTGTTT
CGCAATAAAT TTGTCCACAG CGGCAGTGGC AAAAACGAGA TTTTTTTAAT CTGTTCCGGC
ACCGACATTA CCGAAGAGCG CCGCGCTCAG GAGCGACTGC GTATTCTGGC AAATACCGAC
AGTATCACCG GACTGCCGAA TCGTAACGCA ATGCAGGATT TAATCGATCA CGCTATTAAT
CATGCAGATA ACAATAAAGT TGGGGTTGTG TATCTTGATT TGGATAATTT CAAAAAGGTC
AACGACGCCT ATGGGCATTT GTTTGGTGAC CAGTTATTAC GCGACGTGTC ATTGGCTATT
TTAAGCTGTC TCGAACATGA CCAGGTGTTG GCGCGTCCAG GTGGGGATGA GTTTCTGGTA
CTGGCATCCA ACACCTCACA AAGCGCGCTG GAAGCAATGG CATCACGAAT TTTGACCCGC
TTACGGCTCC CCTTTCGCAT TGGTTTAATT GAAGTTTATA CCAGCTGTTC AGTAGGTATT
GCACTCTCTC CCGAACATGG TTCAGACAGC ACGGCTATTA TTCGTCACGC CGACACAGCA
ATGTACACAG CGAAGGAAGG CGGACGAGGA CAATTTTGCG TTTTTACCCC AGAAATGAAT
CAACGGGTAT TTGAATATCT CTGGCTGGAT ACCAACTTGC GTAAAGCACT GGAAAACGAT
CAGTTGGTTA TTCACTATCA ACCGAAAATC ACCTGGCGTG GCGAAGTGCG CAGTCTGGAA
GCACTAGTAC GTTGGCAGTC ACCTGAACGT GGGTTGATTC CACCGTTGGA CTTCATTTCC
TACGCCGAAG AGTCAGGGCT AATTGTGCCT TTAGGCCGTT GGGTGATTCT CGATGTCGTA
CGCCAGGTGG CAAAGTGGCG GGATAAAGGC ATAAACCTGC GAGTGGCGGT AAATATTTCT
GCACGTCAGC TCGCCGATCA AACCATTTTC ACCGCCCTGA AACAGGTTCT CCAGGAACTC
AATTTTGAAT ACTGCCCTAT AGATGTTGAA CTGACAGAGA GTTGTCTGAT TGAGAATGAT
GAACTGGCAC TGTCTGTTAT TCAACAATTT AGCCAACTAG GTGCGCAAGT GCATCTGGAT
GATTTTGGTC CCGGCTACTC TTCACTTTCG CAACTGGCGC GCTTTCCGAT CGATGCCATC
AAACTTGACC AGGTTTTTGT TCGAGATATT CACAAACAAC CTGTCTCGCA GTCACTGGTC
CGGGCGATCG TCGCTGTGGC CCAGGCATTG AATCTTCAGG TGATCGCCGA AGGTGTAGAG
AGTGCAAAGG AAGATGCTTT TTTAACCAAG AACGGGATCA ATGAGCGGCA AGGATTTTTG
TTTGCCAAAC CGATGCCCGC CGTCGCCTTC GAACGCTGGT ATAAACGCTA TCTGAAGCGC
GCATAA
 
Protein sequence
MKTVRESTTL YNFLGSHNPY WRLTESSDVL RFSTTETTEP DRTLQLSAEQ AARIREMTVI 
TSSLMMSLTV DESDLSVHLV GRKINNREWA GNASAWHDTP AVARDLSHGL SFAEQVVSEA
HSAIVILDSR GNIQRFNRLC EDYTGLKEHD VIGQSVFKLF MSRREAAASR RNNRVFFRSG
NAYKVELWIP TCKGQRLFLF RNKFVHSGSG KNEIFLICSG TDITEERRAQ ERLRILANTD
SITGLPNRNA MQDLIDHAIN HADNNKVGVV YLDLDNFKKV NDAYGHLFGD QLLRDVSLAI
LSCLEHDQVL ARPGGDEFLV LASNTSQSAL EAMASRILTR LRLPFRIGLI EVYTSCSVGI
ALSPEHGSDS TAIIRHADTA MYTAKEGGRG QFCVFTPEMN QRVFEYLWLD TNLRKALEND
QLVIHYQPKI TWRGEVRSLE ALVRWQSPER GLIPPLDFIS YAEESGLIVP LGRWVILDVV
RQVAKWRDKG INLRVAVNIS ARQLADQTIF TALKQVLQEL NFEYCPIDVE LTESCLIEND
ELALSVIQQF SQLGAQVHLD DFGPGYSSLS QLARFPIDAI KLDQVFVRDI HKQPVSQSLV
RAIVAVAQAL NLQVIAEGVE SAKEDAFLTK NGINERQGFL FAKPMPAVAF ERWYKRYLKR
A