| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E1488 |
|---|
| Symbol | trpD |
|---|
| ID | 6271257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 1356658 |
|---|
| End bp | 1358253 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641725588 |
|---|
| Product | bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase |
|---|
| Protein accession | YP_001880094 |
|---|
| Protein GI | 187731859 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0512] Anthranilate/para-aminobenzoate synthases component II
[COG0547] Anthranilate phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR00566] glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
[TIGR01245] anthranilate phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGACA TTCTGCTGCT CGATAATATC GACTCTTTTA CGTACAACCT GGCAGATCAG
TTGCGCAGCA ATGGGCATAA TGTGGTGATT TACCGCAACC ATATTCCGGC GCAGACCTTA
ATTGAACGCC TGGCGACGAT GAGCAATCCG GTGCTGATGC TTTCTCCTGG CCCCGGTGTG
CCGAGCGAAG CCGGTTGTAT GCCGGAACTC CTCACCCGCT TGCGTGGCAA GCTGCCCATT
ATTGGCATTT GCCTCGGACA TCAGGCGATT GTCGAAGCTT ACGGGGGCTA TGTCGGTCAG
GCGGGCGAAA TTCTCCACGG TAAAGCCTCC AGCATTGAAC ACGACGGTCA GGCGATGTTT
GCCGGATTAA CAAACCCGCT ACCAGTGGCG CGTTATCACT CGCTGGTTGG CAGTAACATT
CCGGCCGGTT TAACCATCAA CGCCCATTTT AATGGCATGG TGATGGCAGT ACGTCACGAT
GCGGATCGCG TTTGTGGATT CCAGTTCCAT CCGGAATCCA TTCTTACTAC CCAGGGCGCT
CGCCTGCTGG AACAAACGCT GGCCTGGGCG CAGCGGAAAC TAGAGCCAAC CAACACGCTG
CAACCGATTC TGGAAAAACT GTATCAGGCG CAGACGCTTA GCCAGCAAGA AAGCCACCAG
CTGTTTTCAG CAGTGGTACG TGGCGAACTG AAACCGGAAC AACTGGCGGC GGCGCTGGTG
AGCATGAAAA TTCGCGGCGA GCACCCGAAC GAGATCGCCG GAGCAGCAAC CGCGTTACTG
GAAAACGCCG CGCCGTTCCC GCGCCCGGAT TATCTGTTTG CCGATATCGT CGGCACCGGT
GGTGACGGCA GTAACAGCAT CAATATTTCC ACCGCCAGTG CGTTTGTCGC CGCGGCCTGT
GGGCTGAAAG TGGCGAAACA CGGCAACCGT AGCGTCTCCA GTAAATCTGG TTCGTCCGAT
CTGCTGGCGG CGTTCGGTAT TAATCTTGAT ATGAATGCCG ATAAATCGCG CCAAGCGCTG
GATGAGTTAG GCGTATGTTT CCTCTTTGCG CCGAAATATC ACACCGGATT TCGCCATGCG
ATGCCGGTTC GCCAGCAACT GAAAACCCGC ACTCTGTTCA ACGTGCTGGG ACCATTGATT
AACCCGGCGC ATCCGCCGCT GGCGTTAATT GGTGTTTATA GTCCGGAACT GGTGCTGCCG
ATTGCCGAAA CCTTGCGCGT GCTGGGGTAT CAACGCGCGG CGGTAGTGCA CAGCGGCGGT
ATGGATGAAG TTTCATTACA CGCGCCGACA ATCGTTGCCG AACTGCATGA CGGTGAAATT
AAGAGCTATC AGCTAACTGC AGAAGATTTT GGCCTGACAC CCTACCACCA GGAGCAACTG
GCAGGCGGAA CACCGGAAGA AAACCGTGAC ATTTTAACAC GCTTGTTACA AGGTAAAGGC
GACGCCGCTC ACGAAGCAGC CGTCGCGGCG AATGTCGCCA TGTTAATGCG CCTGCATGGC
CATGAAGATC TGCAAGCCAA TGCGCAAACC GTTCTTGAGG TACTGCGCAG TGGTTCCGCT
TACGACAGAG TTACCGCACT GGCGGCACGA GGGTAA
|
|---|
| Protein sequence | MADILLLDNI DSFTYNLADQ LRSNGHNVVI YRNHIPAQTL IERLATMSNP VLMLSPGPGV
PSEAGCMPEL LTRLRGKLPI IGICLGHQAI VEAYGGYVGQ AGEILHGKAS SIEHDGQAMF
AGLTNPLPVA RYHSLVGSNI PAGLTINAHF NGMVMAVRHD ADRVCGFQFH PESILTTQGA
RLLEQTLAWA QRKLEPTNTL QPILEKLYQA QTLSQQESHQ LFSAVVRGEL KPEQLAAALV
SMKIRGEHPN EIAGAATALL ENAAPFPRPD YLFADIVGTG GDGSNSINIS TASAFVAAAC
GLKVAKHGNR SVSSKSGSSD LLAAFGINLD MNADKSRQAL DELGVCFLFA PKYHTGFRHA
MPVRQQLKTR TLFNVLGPLI NPAHPPLALI GVYSPELVLP IAETLRVLGY QRAAVVHSGG
MDEVSLHAPT IVAELHDGEI KSYQLTAEDF GLTPYHQEQL AGGTPEENRD ILTRLLQGKG
DAAHEAAVAA NVAMLMRLHG HEDLQANAQT VLEVLRSGSA YDRVTALAAR G
|
|---|
| |