| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E1427 |
|---|
| Symbol | |
|---|
| ID | 6270006 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 1305078 |
|---|
| End bp | 1307549 |
|---|
| Gene Length | 2472 bp |
|---|
| Protein Length | 823 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641725528 |
|---|
| Product | exonuclease family protein |
|---|
| Protein accession | YP_001880037 |
|---|
| Protein GI | 187733606 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00000107129 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAGG TCTTTATTTG CGCTGCTATT CCTGATGAAC AGGCCATAAA AGAAGATAGC
GCTGTTGCGG TGGCCACTGC CATTGAAGCC GGTGATGAGC GTCGCGCACG CGCAAAATTT
CATTGGCAAT TTCTGGAGCA ATTCCCTGCA GCTCAGGACT GCGCTTATAA ATTTCTTGTT
TGCGAGGATA AACCCGGTAT ACCCCGCCCT GCCCTCGATT CCTGGGATGC TGAATATATG
CAGGAAAACC GCTGGGATGA GGAGTCTGCT TCCTTTGTCC CGGTTGAGAC TGAATCAGAT
CCGATGAACG TCACTTTTGA CAAGCTGGCC CCTGAAGTAC AGAACGCTGT CATGGTTAAG
TTCGACACAT GTGAAAACAT CACCGTTGAT ATGGTTATTA GCGCACAGGA ATTGTTGCAG
GAAGACATGG CAACATTCGA CGGACATATC GTTGAAGCGT TGATGAAAAT GCCAGAAGTT
AACGCCATGT ATCCGGAGCT TAAGCTGCAT GCCATCGGGT GGGTTAAGCA TAAATGTAAG
CCTGGTGCCA AATGGCCCGA AATTCAGGCA GAGATGCGCA TCTGGAAAAA ACGTCGCGAA
GGTGAACGCA AGGAAACCGG AAAATACACG TCTGTTATTG ATCTCGCCCG CGCCAGAACC
AATCAACAGC ACAGTGAAAA TTCAACAGGA AAAATCAGCC CGGTCATTGC TGCCATTCAT
CGCGAATACA AGCAGACATG GAAAACACTG GATGACGAAC TGGCCTACGC TCTCTGGCCT
GGTGATGTGG ATGCCGGAAA CATTGACGGC AGCATCCATC GCTGGGCAAA AAATGAAGTT
ATCGACAACG ACCGCGAAGA CTGGAAGCGT ATCTCGGCAT CAATGCGCAA ACAGCCTGAT
GCCCTTCGCT ACGACCGCCA GACTATTTTT GGCCTTGTCC GTGAGCGTCC GATCGACATT
CACAAAGATC CCATAGCACT GAACAAATAT ATCTGCGAAT ACCTGACGAC AAAGGGCGTG
TTTGAGAATG AAGAAACAGA CCTGGGCACT GTTGATGTTC TCCAGTCATC AGAAACACAA
ACTGATGCAG TGGAAACTGA GGTATCTGAT ATCCCAAAAA ATGAAACCGC GCCGGAAGCT
GAACCATCTG TAGAGCGTGA GGGGCCGTTC TATTTCCTCT TCGCAGATAA GGACGGAGAA
AAATGCGGTC GCGCAAACAA ACTTTCTGGT CTGGATAAGG CACTGGCTGC TGGCGCCACT
GAAATCACAA AAGAAGAATA TTTTGCCCGA AAAAATGGCA CATACACGGG CTTACCGCAA
AATGTAGATA CCGCTGAAGA TTCAGAACAA CCAGAGCCGA TAAAAGTTAC CGCTGACGAA
GTAAACAAAA TTATGCAGGC AGCCAATATC AGCCAGCCTG ACGCCGATAA GTTGCTTGCT
GCATCACGTG GTGAATTTGT TGAAGGGATT AGTGACCCGA ATGATCCGAA ATGGGTTAAG
GGGATCCAGA CCCGCGATTC TGTGAACCAG AACCAGCATG AATCGGAACG GAACTACCAA
AAAGCGGAAC AAAACAGCCC AAATGCGTTA CAAAACGAGC CAGAAACGAA ACAGCCTGAA
CCAGTGGCGC AACAGGAAGT GGAAAAAGTC TGCACCGCCT GCGGTCAGAC CGGCGGCGGC
AACTGCCCTG ATTGTGGCGC GGTGATGGGC GACGCAACAT ACCAGGAAAC ATTCGATGAA
GAGTATCAGG TTGAAGTTCA GGAAGATGAT CCGGAGGAAA TGGAAGGCGC TGAACATCCA
CACAAGGAGA ACACTGGCGG CAATCAGCAT CACGATAGCG ATAATGAAAC TGGCGAGACG
GCAGATCGCT CAATTAAGGT GAACGGTCAT CACGAAATCA CATCCACCAG CAGGACGTGT
GACCATCTAA TGATCGACCT TGAAACCATG GGAAAAAATC CTGATGCCCC GATCATCTCA
ATAGGTGCAA TATTTTTCGA TCCGCAAACC GGAGATATGG GACCGGAATT TAGTAAGACT
ATCGATCTGG AAACTGCTGG CGGAGTCATT GATCGGGACA CCATTAAATG GTGGCTTAAG
CAATCACGCG AAGCGCAATC TGCCATTATG ACCGATGAAA TCCCGTTAGA TGATGCACTG
TTACAATTGC GGGAATTTAT CGACGAAAAC TCCGGTGAAT TTTTTGTTCA GGTTTGGGGA
AATGGAGCCA ACTTCGACAA CACGATTTTG CGCCGTTCAT ACGAACGGCA GGGGATCCCC
TGCCCGTGGC GTTACTACAA CGATCGCGAT GTACGCACAA TCGTTGAGCT GGGGAAAGCC
ATAGACTTCG ATGCCAGAAC GGCTATTCCA TTCGAAGGTG AGCGCCATAA TGCACTTGAT
GACGCCCGTT ACCAGGCAAA ATACGTTTCA GTTATCTGGC AAAAACTGAT CCCGAGTCAG
GCTGATTTTT AA
|
|---|
| Protein sequence | MSKVFICAAI PDEQAIKEDS AVAVATAIEA GDERRARAKF HWQFLEQFPA AQDCAYKFLV
CEDKPGIPRP ALDSWDAEYM QENRWDEESA SFVPVETESD PMNVTFDKLA PEVQNAVMVK
FDTCENITVD MVISAQELLQ EDMATFDGHI VEALMKMPEV NAMYPELKLH AIGWVKHKCK
PGAKWPEIQA EMRIWKKRRE GERKETGKYT SVIDLARART NQQHSENSTG KISPVIAAIH
REYKQTWKTL DDELAYALWP GDVDAGNIDG SIHRWAKNEV IDNDREDWKR ISASMRKQPD
ALRYDRQTIF GLVRERPIDI HKDPIALNKY ICEYLTTKGV FENEETDLGT VDVLQSSETQ
TDAVETEVSD IPKNETAPEA EPSVEREGPF YFLFADKDGE KCGRANKLSG LDKALAAGAT
EITKEEYFAR KNGTYTGLPQ NVDTAEDSEQ PEPIKVTADE VNKIMQAANI SQPDADKLLA
ASRGEFVEGI SDPNDPKWVK GIQTRDSVNQ NQHESERNYQ KAEQNSPNAL QNEPETKQPE
PVAQQEVEKV CTACGQTGGG NCPDCGAVMG DATYQETFDE EYQVEVQEDD PEEMEGAEHP
HKENTGGNQH HDSDNETGET ADRSIKVNGH HEITSTSRTC DHLMIDLETM GKNPDAPIIS
IGAIFFDPQT GDMGPEFSKT IDLETAGGVI DRDTIKWWLK QSREAQSAIM TDEIPLDDAL
LQLREFIDEN SGEFFVQVWG NGANFDNTIL RRSYERQGIP CPWRYYNDRD VRTIVELGKA
IDFDARTAIP FEGERHNALD DARYQAKYVS VIWQKLIPSQ ADF
|
|---|
| |