| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E1415 |
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| Symbol | oppD |
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| ID | 6272443 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | + |
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| Start bp | 1293707 |
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| End bp | 1294720 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641725517 |
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| Product | oligopeptide transporter ATP-binding component |
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| Protein accession | YP_001880026 |
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| Protein GI | 187734024 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 0.62339 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCGTAA TTGAAACTGC AACTGTGCCG CTCGCACAAC AACAGGCTGA CGCACTGCTG
AACGTGAAAG ATTTGCGTGT CACCTTTAGT ACCCCGGACG GCGACGTCAC GGCGGTCAAT
GATTTGAATT TTTCCCTACG TGCCGGAGAA ACGCTGGGTA TTGTAGGTGA GTCTGGTTCG
GGTAAATCGC AAACTGCATT TGCGTTGATG GGCCTGTTGG CTGCCAACGG ACGTATTGGC
GGATCGGCAA CCTTCAATGG GCGTGAAATC CTCAATTTGC CAGAGCATGA ACTCAATAAA
CTGCGCGCTG AACAAATCTC AATGATTTTT CAGGACCCAA TGACTTCGTT GAATCCCTAT
ATGCGCGTCG GTGAGCAGTT GATGGAAGTG CTGATGCTGC ATAAGAACAT GAGCAAAGCT
GAGGCGTTTG AAGAGTCGGT GCGGATGCTC GATGCGGTAA AAATGCCGGA AGCACGTAAA
CGCATGAAAA TGTACCCGCA CGAGTTTTCT GGTGGCATGC GTCAGCGAGT TATGATTGCG
ATGGCATTGC TATGTCGACC TAAGCTGCTG ATTGCGGATG AACCCACTAC AGCGCTGGAC
GTCACCGTAC AGGCGCAGAT CATGACGCTA TTAAATGAAC TGAAACGGGA ATTTAATACC
GCCATCATTA TGATTACCCA CGATCTTGGC GTGGTGGCGG GGATCTGTGA CAAAGTGCTG
GTAATGTACG CCGGGCGCAC GATGGAATAT GGCAACGCGC GCGATGTCTT TTATCAACCC
GTTCATCCTT ATTCTATCGG TTTGCTCAAC GCGGTGCCGC GTCTCGATGC GGAAGGTGAA
ACAATGTTGA CCATCCCGGG TAATCCGCCA AACCTGCTGC GATTACCGAA AGGTTGCCCG
TTCCAGCCAC GTTGTCCGCA TGCGATGGAA ATTTGTAGTA GCGCACCGCC GCTGGAAGAG
TTTACGCCTG GCCGTCTGTG TGCTTGCTTT AAACCGGTGG AGGAACTGTT ATGA
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| Protein sequence | MSVIETATVP LAQQQADALL NVKDLRVTFS TPDGDVTAVN DLNFSLRAGE TLGIVGESGS
GKSQTAFALM GLLAANGRIG GSATFNGREI LNLPEHELNK LRAEQISMIF QDPMTSLNPY
MRVGEQLMEV LMLHKNMSKA EAFEESVRML DAVKMPEARK RMKMYPHEFS GGMRQRVMIA
MALLCRPKLL IADEPTTALD VTVQAQIMTL LNELKREFNT AIIMITHDLG VVAGICDKVL
VMYAGRTMEY GNARDVFYQP VHPYSIGLLN AVPRLDAEGE TMLTIPGNPP NLLRLPKGCP
FQPRCPHAME ICSSAPPLEE FTPGRLCACF KPVEELL
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