Gene SbBS512_E1375 details

Gene Information

• Locus tag: SbBS512_E1375
• Symbol: prfA
• ID: 6269304
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: +
• Start bp: 1254552
• End bp: 1255634
• Gene Length: 1083 bp
• Protein Length: 360 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 641725484
• Product: peptide chain release factor 1
• Protein accession: YP_001879994
• Protein GI: 187734065
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0216] Protein chain release factor A
• TIGRFAM ID: [TIGR00019] peptide chain release factor 1

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.0000000017097
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGCCTT CTATCGTTGC CAAACTGGAA GCCCTGCATG AACGCCATGA AGAAGTTCAG 
GCGTTGCTGG GTGACGCGCA AACTATCGCC GACCAGGAAC GTTTTCGCGC ATTATCACGC 
GAATATGCGC AGTTAAGTGA TGTTTCGCGC TGTTTTACCG ACTGGCAACA GGTTCAGGAA 
GATATCGAAA CCGCACAGAT GATGCTCGAT GATCCTGAAA TGCGTGAGAT GGCGCAGGAT 
GAACTGCGCA AAGCTAAAGA AAAAAGCGAG CAACTGGAAC AGCAATTACA GGTTCTGTTA 
CTGCCAAAAG ATCCTGATGA CGAACGTAAC GCCTTCCTCG AAGTCCGAGC CGGAACCGGC 
GGCGACGAAG CGGCGCTGTT CGCAGGCGAT CTGTTCCGTA TGTACAGCCG TTACGCCGAA 
GCCCGCCGCT GGCGGGTAGA AATCATGAGC GCCAGCGAGG GTGAACATGG TGGTTATAAA 
GAGATCATCG CCAAAATTAG CGGTGATGGT GTGTATGGTC GTCTGAAATT TGAATCTGGC 
GGTCATCGCG TGCAGCGTGT TCCTGCTACG GAATCGCAGG GTCGTATTCA TACTTCTGCT 
TGTACCGTTG CGGTAATGCC AGAACTGCCT GACGCAGAAC TGCCGGACAT CAACCCAGCA 
GATTTACGCA TTGATACTTT CCGCTCGTCA GGGGCGGGTG GTCAGCACGT TAATACCACC 
GATTCGGCAA TTCGTATTAC TCACTTGCCG ACCGGGATTG TTGTTGAATG TCAGGATGAA 
CGTTCACAAC ATAAAAACAA AGCGAAGGCG CTTTCAGTGC TCGGTGCTCG CATCCACGCT 
GCTGAAATGG CAAAACGCCA ACAGGCCGAA GCGTCTACCC GTCGTAACCT GCTGGGGAGT 
GGCGATCGCA GCGACCGTAA CCGTACTTAC AATTTCCCGC AGGGGCGCGT TACCGATCAC 
CGCATCAACC TGACGCTCTA CCGCCTGGAT GAAGTGATGG AAGGTAAGCT GGATATGCTG 
ATTGAACCGA TTATCCAGGA ACATCAGGCC GACCAACTGG CGGCGTTGTC CGAGCAGGAA 
TAA 

 

Protein sequence

MKPSIVAKLE ALHERHEEVQ ALLGDAQTIA DQERFRALSR EYAQLSDVSR CFTDWQQVQE 
DIETAQMMLD DPEMREMAQD ELRKAKEKSE QLEQQLQVLL LPKDPDDERN AFLEVRAGTG 
GDEAALFAGD LFRMYSRYAE ARRWRVEIMS ASEGEHGGYK EIIAKISGDG VYGRLKFESG 
GHRVQRVPAT ESQGRIHTSA CTVAVMPELP DAELPDINPA DLRIDTFRSS GAGGQHVNTT 
DSAIRITHLP TGIVVECQDE RSQHKNKAKA LSVLGARIHA AEMAKRQQAE ASTRRNLLGS 
GDRSDRNRTY NFPQGRVTDH RINLTLYRLD EVMEGKLDML IEPIIQEHQA DQLAALSEQE