| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E1344 |
|---|
| Symbol | nhaB |
|---|
| ID | 6270764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 1220763 |
|---|
| End bp | 1222304 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641725457 |
|---|
| Product | sodium/proton antiporter |
|---|
| Protein accession | YP_001879967 |
|---|
| Protein GI | 187733223 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3067] Na+/H+ antiporter |
|---|
| TIGRFAM ID | [TIGR00774] Na+/H+ antiporter NhaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.000388765 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGATCT CCTGGGGCCG CGCGCTATGG CGCAATTTTT TGGGCCAGTC CCCCGACTGG
TACAAACTCG CCCTCATCAT TTTCTTAATC GTAAATCCGT TAATTTTCCT CATCAGCCCT
TTCGTCGCTG GCTGGTTGCT GGTAGCGGAA TTTATTTTCA CTCTGGCGAT GGCCCTGAAA
TGCTACCCGC TACTCCCCGG TGGTCTGTTG GCTATTGAAG CGGTATTCAT CGGCATGACC
AGCGCGGAAC ACGTCCGTGA AGAGGTGGCG GCAAATCTTG AAGTCTTGCT GTTACTGATG
TTTATGGTGG CGGGTATCTA TTTTATGAAA CAGCTATTGC TGTTCATATT TACCCGTTTG
CTGTTAAGCA TTCGTTCCAA AATGCTGCTG TCGCTCTCTT TTTGCGTGGC GGCGGCGTTC
CTCTCCGCGT TCCTCGATGC CTTAACCGTC GTGGCGGTGG TGATCAGCGT TGCAGTCGGT
TTTTATGGTA TTTATCACCG CGTAGCCTCT TCCCGTACTG AAGATACCGA CCTGCAAGAC
GATAGTCATA TCGACAAGCA TTACAAAGTG GTTCTGGAAC AGTTCCGTGG CTTTCTGCGT
AGCCTGATGA TGCATGCCGG TGTCGGCACC GCATTAGGCG GCGTAATGAC CATGGTGGGC
GAACCACAGA ACCTGATCAT CGCTAAAGCG GCTGGCTGGC ATTTTGGCGA TTTCTTCCTG
CGCATGTCGC CGGTGACCGT TCCGGTTCTG ATTTGTGGCC TGTTAACCTG CCTGCTGGTA
GAGAAGCTGC GTTGGTTTGG CTACGGTGAA ACGCTGCCGG AGAAAGTCCG CGAAGTGTTG
CAACAGTTTG ACGATCAAAG CCGCCACCAG CGTACCCGTC AGGATAAAAT CCGTCTGATT
GTCCAGGCGA TTATCGGCGT CTGGCTGGTG ACTGCGCTGG CGTTGCATCT GGCGGAGGTT
GGCTTGATTG GTTTGTCGGT CATTATTCTG GCGACATCAT TGACCGGTGT CACCGATGAA
CATGCTATCG GTAAAGCCTT CACCGAATCT CTGCCATTCA CCGCACTGTT GACGGTGTTT
TTCTCGGTAG TCGCGGTGAT TATCGACCAA CAACTGTTTT CGCCGATTAT TCAGTTTGTG
TTGCAGGCAT CGGAACATGC TCAGCTGTCG TTGTTCTATA TTTTCAACGG CCTGCTGTCA
TCCATTTCGG ATAACGTCTT CGTGGGGACG ATTTATATCA ACGAAGCGAA AGCGGCAATG
GAAAGTGGCG CTATCACGTT GAAGCAATAC GAGCTGCTGG CGGTCGCCAT TAATACCGGT
ACCAATCTGC CCTCTGTCGC TACGCCGAAC GGTCAGGCTG CGTTCCTGTT CCTGCTGACC
TCTGCACTCG CGCCATTGAT TCGCCTCTCT TATGGCCGCA TGGTGTGGAT GGCCCTGCCT
TACACCCTCG TCCTGACACT CGTCGGGCTG CTCTGCGTCG AGTTTACGCT TGCCCCTGTA
ACCGAATGGT TTATGCAAAT GGGCTGGATA GCAACGCTTT GA
|
|---|
| Protein sequence | MEISWGRALW RNFLGQSPDW YKLALIIFLI VNPLIFLISP FVAGWLLVAE FIFTLAMALK
CYPLLPGGLL AIEAVFIGMT SAEHVREEVA ANLEVLLLLM FMVAGIYFMK QLLLFIFTRL
LLSIRSKMLL SLSFCVAAAF LSAFLDALTV VAVVISVAVG FYGIYHRVAS SRTEDTDLQD
DSHIDKHYKV VLEQFRGFLR SLMMHAGVGT ALGGVMTMVG EPQNLIIAKA AGWHFGDFFL
RMSPVTVPVL ICGLLTCLLV EKLRWFGYGE TLPEKVREVL QQFDDQSRHQ RTRQDKIRLI
VQAIIGVWLV TALALHLAEV GLIGLSVIIL ATSLTGVTDE HAIGKAFTES LPFTALLTVF
FSVVAVIIDQ QLFSPIIQFV LQASEHAQLS LFYIFNGLLS SISDNVFVGT IYINEAKAAM
ESGAITLKQY ELLAVAINTG TNLPSVATPN GQAAFLFLLT SALAPLIRLS YGRMVWMALP
YTLVLTLVGL LCVEFTLAPV TEWFMQMGWI ATL
|
|---|
| |