Gene SbBS512_E1304 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E1304 
SymbolpotA 
ID6271341 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp1189367 
End bp1190503 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content51% 
IMG OID641725423 
Productputrescine/spermidine ABC transporter ATPase protein 
Protein accessionYP_001879934 
Protein GI187733204 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID[TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGACAGA GTAAAAAATT GAATAAACAA CCGAGTTCGC TTTCACCGCT GGTGCAATTG 
GCGGGAATTC GCAAATGCTT TGATGGTAAA GAGGTCATTC CCCAGCTGGA TCTGACTATC
AACAATGGCG AGTTCCTCAC GCTGCTTGGC CCTTCTGGCT GCGGTAAAAC AACCGTTCTT
CGCCTGATTG CAGGTCTGGA AACTGTTGAT TCCGGACGCA TCATGCTGGA TAACGAGGAC
ATCACCCACG TTCCGGCGGA AAACCGCTAT GTGAACACTG TTTTCCAAAG CTACGCACTT
TTCCCCCACA TGACCGTGTT CGAAAATGTG GCCTTTGGGT TGCGCATGCA AAAAACCCCC
GCTGCTGAAA TTACGCCCCG CGTGATGGAA GCCCTGCGGA TGGTGCAACT GGAAACCTTC
GCTCAACGTA AACCGCATCA GCTCTCTGGT GGTCAACAGC AACGCGTCGC CATTGCTCGC
GCGGTGGTTA ACAAGCCTCG TCTGTTGTTG CTGGATGAGT CGCTCTCAGC GCTGGATTAC
AAACTGCGTA AGCAAATGCA GAACGAGCTG AAAGCGTTAC AGCGTAAGCT TGGCATTACA
TTCGTCTTCG TGACTCACGA CCAGGAAGAA GCACTCACCA TGTCAGACAG GATTGTGGTG
ATGCGCGAGG GTCGCATTGA GCAAGACGGC ACGCCGCGTG AAATCTACGA AGAGCCGAAA
AACCTGTTTG TTGCCGGCTT CATTGGCGAA ATTAATATGT TTAACGCCAC GGTGATCGAG
CGACTCGACG AGCAGCGCGT ACGCGCCAAC GTTGAAGGCC GCGAATGTAA TATCTACGTT
AACTTCGCCG TTGAACCGGG GCAAAAACTG CATGTTCTGC TGCGCCCGGA AGACTTACGT
GTTGAAGAGA TTAACGACGA CAACCACGCT GAAGGGCTGA TTGGTTACGT TCGTGAGCGT
AACTACAAAG GCATGACGCT GGAGTCGGTT GTTGAACTGG AAAATGGCAA GATGGTGATG
GTCAGCGAAT TCTTCAATGA AGACGATCCT GACTTTGACC ACTCTCTCGA CCAAAAAATG
GCCATTAATT GGGTAGAAAG CTGGGAGGTC GTACTGGCTG ATGAAGAACA CAAGTAA
 
Protein sequence
MGQSKKLNKQ PSSLSPLVQL AGIRKCFDGK EVIPQLDLTI NNGEFLTLLG PSGCGKTTVL 
RLIAGLETVD SGRIMLDNED ITHVPAENRY VNTVFQSYAL FPHMTVFENV AFGLRMQKTP
AAEITPRVME ALRMVQLETF AQRKPHQLSG GQQQRVAIAR AVVNKPRLLL LDESLSALDY
KLRKQMQNEL KALQRKLGIT FVFVTHDQEE ALTMSDRIVV MREGRIEQDG TPREIYEEPK
NLFVAGFIGE INMFNATVIE RLDEQRVRAN VEGRECNIYV NFAVEPGQKL HVLLRPEDLR
VEEINDDNHA EGLIGYVRER NYKGMTLESV VELENGKMVM VSEFFNEDDP DFDHSLDQKM
AINWVESWEV VLADEEHK