| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E1158 |
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| Symbol | mdtB |
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| ID | 6268911 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | - |
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| Start bp | 1052092 |
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| End bp | 1055214 |
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| Gene Length | 3123 bp |
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| Protein Length | 1040 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641725288 |
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| Product | multidrug efflux system subunit MdtB |
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| Protein accession | YP_001879805 |
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| Protein GI | 187734026 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGGTGT TACCTCCGAG CAGCACAGGC GGCCCGTCGC GCCTGTTTAT TATGCGTCCT
GTCGCCACCA CGCTGCTGAT GGTGGCGATC TTACTCGCCG GGATTATCGG TTATCGCGCC
CTGCCCGTTT CGGCGCTGCC GGAAGTGGAC TATCCGACCA TTCAGGTGGT CACGCTCTAC
CCAGGTGCGA GCCCGGATGT CATGACCTCT GCCGTTACCG CGCCGCTCGA ACGCCAGTTC
GGGCAGATGT CTGGCCTGAA ACAGATGTCG TCGCAAAGTT CCGGCGGTGC GTCAGTTATC
ACCTTACAGT TCCAGCTAAC ATTACCGCTG GATGTCGCCG AGCAGGAAGT GCAGGCCGCG
ATTAACGCTG CGACCAACTT GTTGCCGAGC GATCTGCCTA ACCCGCCGGT TTACAGCAAA
GTGAACCCGG CAGATCCGCC GATCATGACG CTCGCCGTTA CCTCAACCGC CATGCCGATG
ACGCAAGTGG AAGATATGGT GGAAACCCGC GTCGCGCAGA AAATCTCGCA GATTTCCGGC
GTCGGCCTGG TGACGCTTTC CGGCGGCCAG CGTCCGGCTG TTCGCGTCAA ACTTAACGCT
CAGGCGATTG CCGCCCTCGG CCTGACCAGC GAAACCGTGC GCACCGCCAT TACCGGCGCT
AACGTTAACT CGGCAAAAGG TAGCCTCGAC GGCCCTTCCC GCGCGGTTAC GCTTTCCGCG
AATGACCAAA TGCAATCTGC GGAAGAATAT CGCCAGTTGA TTATCGCCTA CCAGAACGGC
GCGCCGATTC GTCTGGGCGA TGTCGCAACC GTAGAGCAAG GTGCAGAAAA CAGCTGGCTC
GGCGCATGGG CGAACAAAGA ACAGGCCATT GTGATGAATG TTCAGCGCCA GCCCGGTGCT
AACATTATCT CCACCGCCGA CAGCATCCGG CAGATGCTGC CACAGCTCAC CGAGAGTTTG
CCGAAATCGG TGGAGGTGAC GGTACTTTCT GACCGTACCA CCAATATCCG CGCATCCGTC
GACGATACTC AGTGTGAATT GATGATGGCT ATCGCGCTGG TAGTAATGAT TATCTACCTG
TTTTTGCGCA ATATTCCGGC GACCATCATT CCCGGCGTCG CAGTGCCGCT GTCGTTAATC
GGCACCTTCG CGGTTATGGT GTTTCTCGAT TTTTCAATCA ATAACCTGAC GCTGATGGCG
TTAACTATCG CCACCGGGTT CGTGGTCGAT GACGCCATCG TGGTGATCGA AAATATTTCC
CGCTATATCG AAAAAGGCGA AAAACCGTTG GCGGCGGCGC TCAAAGGCGC AGGTGAAATC
GGCTTTACCA TTATCTCGCT GACCTTCTCG CTGATTGCGG TGTTGATCCC ACTGCTGTTT
ATGGGCGATA TCGTCGGGCG ACTGTTCCGC GAATTTGCTA TTACCCTGGC GGTAGCGATT
TTAATCTCAG CCGTGGTGTC GCTAACCCTG ACACCGATGA TGTGCGCACG GATGCTCAGC
CAGGAGTCGT TGCGTAAACA GAACCGCTTC TCCCGTGCCT CGGAAAAAAT GTTCGACAGG
ATAATCGCCG CCTATGGTCG TGGACTGGCG AAAGTGCTGA ATCATCCGTG GCTGACCTTA
AGCGTGGCGC TCAGCACGCT GCTGCTTAGC GTTCTATTGT GGGTGTTCAT TCCGAAAGGT
TTCTTCCCGG TACAGGATAA CGGCATTATT CAGGGCACTT TGCAGGCACC GCAATCCAGC
TCCTTTGCCA ATATGGCCCA GCGGCAACGC CAGGTCGCGG ACGTGATTTT GCAGGATCCG
GCAGTGCAAA GTCTGACCTC ATTTGTTGGC GTTGATGGCA CTAACCCGTC GCTGAACAGT
GCGCGTTTGC AGATCAACCT CAAACCGCTG GATGAACGTG ATGATCGGGT GCAAAAAGTC
ATCGCCCGTC TGCAAACGGC GGTGGATAAA GTGCCGGGCG TCGATCTCTT CCTGCAACCA
ACGCAGGACC TGACCATCGA TACTCAGGTC AGCCGCACCC AGTACCAGTT TACCTTGCAG
GCCACGTCAC TGGATGCGCT CAGTACCTGG GTGCCACAGT TGATGGAAAA ACTCCAGCAA
CTGCCACAGC TTTCTGATGT CTCCAGCGAC TGGCAGGACA AAGGGCTGGT GGCGTATGTC
AATGTTGATC GTGACAGCGC CAGCCGTCTG GGGATCAGCA TGGCAGATGT CGATAACGCC
CTGTACAACG CGTTTGGTCA GCGGCTGATT TCCACTATTT ATACTCAAGC CAACCAGTAT
CGCGTGGTGC TGGAACACAA CACCGAAAAT ACCCCAGGCC TCGCGGCGCT GGGTACCATT
CGCCTGACCA GCAGCGACGG TGGCGTGGTT CCGCTAAGTT CGATTGCCAA AATTGAGCAG
CGTTTTGCAC CGCTCTCCAT CAACCATCTG GATCAGTTCC CGGTAACAAC CATCTCCTTT
AACGTGCCGG ATAATTATTC GCTGGGCGAT GCGGTGCAGG CGATTATGGA CACTGAAAAG
ACGCTGAATC TACCGGTGGA TATCACCACG CAGTTCCAGG GCTGCACCCT CGCCTTCCAG
TCGGCGCTGG GCAGCACTGT CTGGCTGATT GTCGCAGCGG TGGTGGCGAT GTATATCGTG
CTCGGCATTC TGTACGAGAG CTTTATTCAT CCAATCACCA TTCTCTCGAC GTTGCCCACG
GCAGGTGTTG GCGCACTGCT GGCGTTAATG ATTGCCGGTA GCGAACTGGA TGTGATTGCG
ATTATCGGCA TTATTTTGCT GATCGGTATC GTGAAGAAAA ACGCCATCAT GATGATCGAC
TTCGCGCTGG CTGCCGAGCG CGAGCAAGGC ATGTCGCCGC GCGATGCAAT CTACCAGGCT
TGTCTGCTGC GTTTTCGTCC GATCCTGATG ACCACCCTGG CGGCTCTGCT TGGCGCGCTG
CCGCTGATGT TGAGTACCGG GGTCGGCGCG GAACTGCGTC GTCCGTTAGG CATTGGTATG
GTCGGTGGTC TGGTTGTCAG CCAGGTACTG ACGCTGTTTA CCACGCCAGT GATTTATCTG
CTGTTCGACC GCCTGGCATT GTGGACTAAA AGCCGCTTTG CCTGTCATGA AGAGGAGGCG
TAA
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| Protein sequence | MQVLPPSSTG GPSRLFIMRP VATTLLMVAI LLAGIIGYRA LPVSALPEVD YPTIQVVTLY
PGASPDVMTS AVTAPLERQF GQMSGLKQMS SQSSGGASVI TLQFQLTLPL DVAEQEVQAA
INAATNLLPS DLPNPPVYSK VNPADPPIMT LAVTSTAMPM TQVEDMVETR VAQKISQISG
VGLVTLSGGQ RPAVRVKLNA QAIAALGLTS ETVRTAITGA NVNSAKGSLD GPSRAVTLSA
NDQMQSAEEY RQLIIAYQNG APIRLGDVAT VEQGAENSWL GAWANKEQAI VMNVQRQPGA
NIISTADSIR QMLPQLTESL PKSVEVTVLS DRTTNIRASV DDTQCELMMA IALVVMIIYL
FLRNIPATII PGVAVPLSLI GTFAVMVFLD FSINNLTLMA LTIATGFVVD DAIVVIENIS
RYIEKGEKPL AAALKGAGEI GFTIISLTFS LIAVLIPLLF MGDIVGRLFR EFAITLAVAI
LISAVVSLTL TPMMCARMLS QESLRKQNRF SRASEKMFDR IIAAYGRGLA KVLNHPWLTL
SVALSTLLLS VLLWVFIPKG FFPVQDNGII QGTLQAPQSS SFANMAQRQR QVADVILQDP
AVQSLTSFVG VDGTNPSLNS ARLQINLKPL DERDDRVQKV IARLQTAVDK VPGVDLFLQP
TQDLTIDTQV SRTQYQFTLQ ATSLDALSTW VPQLMEKLQQ LPQLSDVSSD WQDKGLVAYV
NVDRDSASRL GISMADVDNA LYNAFGQRLI STIYTQANQY RVVLEHNTEN TPGLAALGTI
RLTSSDGGVV PLSSIAKIEQ RFAPLSINHL DQFPVTTISF NVPDNYSLGD AVQAIMDTEK
TLNLPVDITT QFQGCTLAFQ SALGSTVWLI VAAVVAMYIV LGILYESFIH PITILSTLPT
AGVGALLALM IAGSELDVIA IIGIILLIGI VKKNAIMMID FALAAEREQG MSPRDAIYQA
CLLRFRPILM TTLAALLGAL PLMLSTGVGA ELRRPLGIGM VGGLVVSQVL TLFTTPVIYL
LFDRLALWTK SRFACHEEEA
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