| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E1157 |
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| Symbol | mdtC |
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| ID | 6272962 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | - |
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| Start bp | 1049014 |
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| End bp | 1052091 |
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| Gene Length | 3078 bp |
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| Protein Length | 1025 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641725287 |
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| Product | multidrug efflux system subunit MdtC |
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| Protein accession | YP_001879804 |
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| Protein GI | 187733235 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGTTTT TTGCCCTCTT CATTTACCGC CCGGTGGCGA CGATTTTACT GTCGGTCGCC
ATTACCCTGT GCGGCATACT GGGCTTCCGT ATGCTGCCGG TCGCCCCGCT GCCGCAGGTC
GATTTTCCGG TGATTATGGT CAGCGCCTCG CTGCCCGGTG CGTCGCCGGA GACAATGGCG
TCTTCCGTTG CCACGCCGCT GGAGCGTTCA CTTGGGCGCA TTGTCGGGGT CAGTGAAATG
ACCTCCAGCA GTTCGCTCGG CAGCACGCGT ATTATTTTGC AGTTTGATTT TGACCGGGAT
ATCAACGGTG CGGCGCGTGA TGTGCAGGCG GCGATCAACG CCGCACAAAG TCTGCTGCCC
AGTGGGATGC CCAGCCGCCC GACTTATCGC AAAGCGAACC CGTCGGATGC GCCAATTATG
ATCCTCACGC TAACCTCCGA TACTTATTCG CAGGGTGAAT TGTACGATTT CGCCTCGACG
CAGCTGGCTC CGACGATTTC GCAAATCGAC GGTGTCGGTG ATGTCGATGT CGGCGGCAGC
TCGCTGCCCG CCGTGCGCGT CGGGCTGAAC CCGCAGGCGC TGTTTAATCA GGGCGTGTCG
CTGGATGACG TACGCACTGC CATCAGCAAT GCCAACGTGC GTAAACCGCA GGGGGCACTG
GAAGATGGCA CTCACCGCTG GCAGATCCAG ACCAATGATG AGCTAAAAAC CGCCGCTGAA
TATCAGCCGT TGATTATTCA CTACAACAAC GGCGGCGCGG TTCGTCTGGG CGATGTGGCG
ACGGTGACCG ACTCAGTGCA GGATGTGCGC AACGCCGGGA TGACCAACGC CAAACCGGCT
ATTTTGCTGA TGATCCGCAA GCTGCCGGAA GCCAATATTA TCCAGACGGT TGACAGCATC
CGGGCAAAAT TACCGGAGTT GCAGGAAACC ATTCCGGCGG CGATTGATCT GCAAATTGCC
CAGGATCGCT CCCCCACCAT TCGCGCCTCG CTGGAAGAAG TCGAGCAAAC GCTGATTATC
TCGGTGGCGC TGGTGATTCT GGTGGTGTTT TTATTCCTGC GCTCGGGTCG CGCCACTATT
ATTCCCGCCG TTGCGGTGCC GGTTTCGCTG ATTGGTACGT TTGCGGCGAT GTACCTGTGC
GGATTCAGTC TCAATAACCT TTCGTTAATG GCGCTCACCA TCGCTACTGG TTTCGTGGTG
GATGACGCCA TCGTGGTGCT GGAAAACATT GCACGTCATC TGGAAGCGGG AATGAAACCG
TTGCAAGCCG CACTGCAAGG TACTCGCGAA GTCGGTTTTA CGGTGCTGTC GATGAGTCTG
TCACTGGTGG CGGTGTTCCT GCCGCTGCTG TTGATGGGCG GATTGCCGGG CCGACTGTTA
CGCGAGTTTG CCGTGACGCT TTCTGTCGCC ATTGGTATTT CGTTGCTGGT TTCCCTGACG
CTAACGCCAA TGATGTGTGG CTGGATGCTG AAAGCCAGCA AGCCGCGCGA GCAAAAGCGA
CTGCGTGGTT TTGGCCGCAT GTTGGTAGCC CTGCAACAAG GCTATGGCAA GTCGCTGAAA
TGGGTGCTCA ATCATACCCG TCTGGTGGGC GTGGTGCTGC TTGGCACCAT TGCGCTGAAT
ATCTGGCTGT ATATCTCGAT CCCGAAAACC TTCTTCCCGG AGCAGGACAC TGGCGTGTTG
ATGGGCGGGA TTCAGGCGGA TCAGAGTATT TCGTTTCAGG CGATGCGCGG TAAGTTGCAG
GATTTCATGA AAATTATCCG TGACGATCCG GCAGTGGATA ATGTCACCGG CTTTACAGGC
GGTTCGCGAG TGAACAGCGG GATGATGTTT ATCACCCTCA AGCCACGCGA CGAACGCAGC
GAAACGGCGC AGCAAATTAT CGACCGTCTG CGCGCAAAAC TGGCGAAAGA ACCGGGGGCG
AATCTGTTCC TGATGGCGGT ACAGGATATT CGCGTTGGTG GGCGTCAGTC GAACGCCAGC
TACCAGTACA CGTTGTTATC CGACGACCTG GCGGCACTGC GCGAATGGGA GCCAAAAATC
CGCAAAAAAC TGGCGACGTT GCCGGAACTG GCGGACGTGA ACTCCGATCA GCAGGATAAC
GGCGCGGAGA TGAATCTGGT TTACGACCGC GACACCATGG CACGGCTGGG AATCGACGTG
CAGGCCGCCA ACAGCCTGTT AAATAACGCC TTCGGTCAGC GGCAAATCTC GACCATTTAT
CAGCCGATGA ACCAGTATAA AGTGGTGATG GAAGTGGATC CGCGCTATAC CCAGGACATC
AGCGCGCTGG AAAAAATGTT CGTCATTAAT AACGAAGGCA AAGCGATCCC GCTGTCGTAT
TTCGCTAAAT GGCAACCGGC GAATGCCCCA CTATCGGTGA ATCATCAGGG ATTATCGGCA
GCCTCGACCA TCTCGTTCAA CCTGCCGACC GGAAAATCGC TCTCGGACGC CAGTGCGGCG
ATCGATCGCG CAATGACCCA GCTTGGTGTG CCTTCGACGG TGCGCGGCAG TTTTGCCGGC
ACGGCGCAGG TGTTCCAGGA GACGATGAAC TCACAGGTGA TCCTGATTAT CGCCGCCATC
GCCACGGTGT ATATCGTGCT GGGTATCCTT TACGAGAGTT ACGTACATCC GCTGACGATC
CTCTCCACCC TGCCCTCGGC GGGCGTTGGA GCGCTGCTGG CGCTGGAGCT GTTCAATGCC
CCGTTCAGCC TAATCGCCCT GATAGGGATC ATGCTATTAA TCGGCATCGT GAAGAAAAAC
GCCATTATGA TGGTCGATTT TGCGCTTGAA GCCCAACGGC ACGGTAACCT GACGCCGCAG
GAAGCTATTT TCCAGGCCTG TCTGCTGCGT TTTCGCCCGA TTATGATGAC TACCCTGGCG
GCGCTGTTTG ACGCGCTGCC GCTGGTGTTG TCGGGCGGTG ACGGCTCGGA GCTGCGGCAA
CCCCTGGGGA TCACCATTGT CGGCGGACTG GTAATGAGCC AGCTCCTTAC GCTGTATACC
ACGCCGGTGG TGTATCTCTT TTTCGACCGT CTGCGGCTGC GTTTTTCGCG TAAACCTAAA
CAAACGGTAA CCGAGTAA
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| Protein sequence | MKFFALFIYR PVATILLSVA ITLCGILGFR MLPVAPLPQV DFPVIMVSAS LPGASPETMA
SSVATPLERS LGRIVGVSEM TSSSSLGSTR IILQFDFDRD INGAARDVQA AINAAQSLLP
SGMPSRPTYR KANPSDAPIM ILTLTSDTYS QGELYDFAST QLAPTISQID GVGDVDVGGS
SLPAVRVGLN PQALFNQGVS LDDVRTAISN ANVRKPQGAL EDGTHRWQIQ TNDELKTAAE
YQPLIIHYNN GGAVRLGDVA TVTDSVQDVR NAGMTNAKPA ILLMIRKLPE ANIIQTVDSI
RAKLPELQET IPAAIDLQIA QDRSPTIRAS LEEVEQTLII SVALVILVVF LFLRSGRATI
IPAVAVPVSL IGTFAAMYLC GFSLNNLSLM ALTIATGFVV DDAIVVLENI ARHLEAGMKP
LQAALQGTRE VGFTVLSMSL SLVAVFLPLL LMGGLPGRLL REFAVTLSVA IGISLLVSLT
LTPMMCGWML KASKPREQKR LRGFGRMLVA LQQGYGKSLK WVLNHTRLVG VVLLGTIALN
IWLYISIPKT FFPEQDTGVL MGGIQADQSI SFQAMRGKLQ DFMKIIRDDP AVDNVTGFTG
GSRVNSGMMF ITLKPRDERS ETAQQIIDRL RAKLAKEPGA NLFLMAVQDI RVGGRQSNAS
YQYTLLSDDL AALREWEPKI RKKLATLPEL ADVNSDQQDN GAEMNLVYDR DTMARLGIDV
QAANSLLNNA FGQRQISTIY QPMNQYKVVM EVDPRYTQDI SALEKMFVIN NEGKAIPLSY
FAKWQPANAP LSVNHQGLSA ASTISFNLPT GKSLSDASAA IDRAMTQLGV PSTVRGSFAG
TAQVFQETMN SQVILIIAAI ATVYIVLGIL YESYVHPLTI LSTLPSAGVG ALLALELFNA
PFSLIALIGI MLLIGIVKKN AIMMVDFALE AQRHGNLTPQ EAIFQACLLR FRPIMMTTLA
ALFDALPLVL SGGDGSELRQ PLGITIVGGL VMSQLLTLYT TPVVYLFFDR LRLRFSRKPK
QTVTE
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