| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E1135 |
|---|
| Symbol | thiD |
|---|
| ID | 6270712 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | + |
|---|
| Start bp | 1027108 |
|---|
| End bp | 1027908 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641725264 |
|---|
| Product | phosphomethylpyrimidine kinase |
|---|
| Protein accession | YP_001879782 |
|---|
| Protein GI | 187733579 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase |
|---|
| TIGRFAM ID | [TIGR00097] phosphomethylpyrimidine kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 0.878652 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGAA TTAACGCTCT GACGATTGCC GGTACTGATC CCAGTGGTGG TGCGGGGATT
CAGGCCGATC TTAAAACCTT CTCGGCACTT GGCGCTTATG GTTGCTCAGT TATTACTGCA
CTGGTGGCGC AAAATACCCG TGGCGTACAG TCGGTGTATC GCATTGAGCC TGATTTTGTC
GCCGCCCAGC TCGATTCGGT GTTCAGCGAT GTGCGAATCG ACACCACTAA AATCGGTATG
TTGGCGGAAA CCGATATTGT TGAAGCGGTG GCAGAACGGT TGCAACGTTA TCAGATCCAA
AACGTGGTAC TCGACACCGT TATGCTGGCA AAAAGCGGCG ACCCGCTGCT TTCACCTTCG
GCGGTTGCTA CGCTGCGCAG TCGATTATTG CCACAGGTTT CATTAATAAC GCCAAACTTG
CCCGAAGCTG CCGCCTTGCT CGACGCGCCA CACGCGCGCA CCGAACAGGA AATGCTGGAA
CAAGGGCGAT CGCTGTTGGC GATGGGCTGT GGCGCAGTGC TAATGAAAGG TGGTCATCTG
GATGATGAGC AAAGCCCGGA CTGGCTGTTT ACCCGCGAGG GTGAACAACG GTTTACCGCA
CCGCGCATTA TGACCAAAAA CACCCACGGT ACTGGTTGTA CACTCTCTGC GGCGTTGGCT
GCACTACGCC CGCGCCATAC AAACTGGGCT GACACCGTAC AGGAGGCAAA AAGCTGGCTT
TCATCGGCGT TAGCCCAGGC CGACACGCTG GAAGTTGGTC ACGGTATTGG TCCGGTTCAC
CACTTCCACG CCTGGTGGTG A
|
|---|
| Protein sequence | MKRINALTIA GTDPSGGAGI QADLKTFSAL GAYGCSVITA LVAQNTRGVQ SVYRIEPDFV
AAQLDSVFSD VRIDTTKIGM LAETDIVEAV AERLQRYQIQ NVVLDTVMLA KSGDPLLSPS
AVATLRSRLL PQVSLITPNL PEAAALLDAP HARTEQEMLE QGRSLLAMGC GAVLMKGGHL
DDEQSPDWLF TREGEQRFTA PRIMTKNTHG TGCTLSAALA ALRPRHTNWA DTVQEAKSWL
SSALAQADTL EVGHGIGPVH HFHAWW
|
|---|
| |