| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E1025 |
|---|
| Symbol | araF |
|---|
| ID | 6268904 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 947492 |
|---|
| End bp | 948481 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641725168 |
|---|
| Product | L-arabinose ABC transporter, periplasmic L-arabinose-binding protein |
|---|
| Protein accession | YP_001879690 |
|---|
| Protein GI | 187733409 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.636508 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACAAAT TTACTAAAGC CCTGGCAGCC ATTGGTCTGG CAGCCGTTAT GTCACAATCC
GCTATGGCGG AGAACCTGAA GCTCGGTTTT CTGGTGAAGC AACCGGAAGA GCCGTGGTTC
CAGACCGAAT GGAAGTTTGC CGATAAAGCC GGGAAGGATT TAGGGTTTGA GGTTATTAAG
ATTGCCGTGC CGGATGGCGA AAAAACATTG AACGCGATCG ACAGCCTGGC TGCCAGTGGC
GCAAAAGGTT TCGTTATTTG TACTCCGGAC CCCAAACTCG GCTCTGCCAT CGTCGCGAAA
GCGCGTGGCT ACGATATGAA AGTCATTGCC GTGGATGATC AGTTTGTTAA CGCCAAAGGT
AAGCCAATGG ATACCGTTCC GCTGGTGATG ATGGCGGCGA CTAAAATTGG CGAACGTCAG
GGTCAGGAAC TGTATAAAGA GATGCAGAAA CGTGGCTGGG ATGTCAAAGA AAGCGCGGTG
ATGGTGATTA CCGCCAACGA ACTGGATACC GCCCGCCGCC GTACTACGGG ATCTATGGAT
GCGCTGAAAG CGGCCGGATT CCCGGAAAAA CAAATTTATC AGGTACCTAC CAAATCTAAC
GACATCCCGG GGGCATTTGA CGCTGCCAAC TCAATGCTGG TTCAACATCC TGAAGTTAAA
CATTGGCTGA TCGTCGGTAT GAACGACAGC ACCGTGCTGG GCGGCGTACG CGCGACGGAA
GGTCAGGGCT TTAAAGCTGC TGATATTATC GGCATTGGCA TTAACGGTGT GGATGCGGTG
AGCGAACTGT CTAAAGTACA GGCAACCGGC TTCTACGGTT CCCTGCTGCC AAGCCCGGAC
GTACATGGCT ATAAATCCAG CGAAATGCTT TACAACTGGG TAGCAAAAGA CGTTGAACCG
CCAAAATTTA CCGAAGTTAC CGACGTGGTG CTGATCACGC GTGACAACTT TAAAGAAGAA
CTGGAGAAAA AAGGTTTAGG CGGTAAGTAA
|
|---|
| Protein sequence | MHKFTKALAA IGLAAVMSQS AMAENLKLGF LVKQPEEPWF QTEWKFADKA GKDLGFEVIK
IAVPDGEKTL NAIDSLAASG AKGFVICTPD PKLGSAIVAK ARGYDMKVIA VDDQFVNAKG
KPMDTVPLVM MAATKIGERQ GQELYKEMQK RGWDVKESAV MVITANELDT ARRRTTGSMD
ALKAAGFPEK QIYQVPTKSN DIPGAFDAAN SMLVQHPEVK HWLIVGMNDS TVLGGVRATE
GQGFKAADII GIGINGVDAV SELSKVQATG FYGSLLPSPD VHGYKSSEML YNWVAKDVEP
PKFTEVTDVV LITRDNFKEE LEKKGLGGK
|
|---|
| |