Gene SbBS512_E0925 details

Gene Information

• Locus tag: SbBS512_E0925
• Symbol: vsr
• ID: 6272912
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: +
• Start bp: 863128
• End bp: 863598
• Gene Length: 471 bp
• Protein Length: 156 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 641725085
• Product: very short patch repair protein
• Protein accession: YP_001879612
• Protein GI: 187732101
• COG category: [L] Replication, recombination and repair
• COG ID: [COG3727] DNA G:T-mismatch repair endonuclease
• TIGRFAM ID: [TIGR00632] DNA mismatch endonuclease Vsr

Plasmid Coverage information

• Num covering plasmid clones: 35
• Plasmid unclonability p-value: 0.896374
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCGACG TTCACGATAA GGCCACTCGC AGCAAAAATA TGCGCGCGAT TGCCACGCGT 
GATACGGCGA TTGAGAAGCG CCTCGCCAGT CTGTTAACCG GGCAGGGCCT AGCGTTTCGC 
GTTCAGGACG CCAGTCTGCC CGGAAGCCCG GATTTTGTCG TTGATGAATA TCGCTGCGTG 
ATATTTACCC ATGGCTGCTT CTGGCATCAT CATCACTGCT ATCTGTTTAA AGTACCTGCG 
ACTCGAACCG AGTTCTGGCT GGAGAAGATA GGTAAAAATG TTGAACGCGA TCGCCGCGAT 
ATCAGTCGTT TGCAGGAACT CGGCTGGCGC GTACTGATTG TCTGGGAGTG TGCATTACGT 
GGGCGCGAGA AGCTGACGGA TGAAGCGCTT ACCGAGCGTC TGGAAGAGTG GATCTGCGGC 
GAAGGTGCCA GCGCGCAGAT CGACACGCAG GGGATTCATT TACTCGCTTG A 

 

Protein sequence

MADVHDKATR SKNMRAIATR DTAIEKRLAS LLTGQGLAFR VQDASLPGSP DFVVDEYRCV 
IFTHGCFWHH HHCYLFKVPA TRTEFWLEKI GKNVERDRRD ISRLQELGWR VLIVWECALR 
GREKLTDEAL TERLEEWICG EGASAQIDTQ GIHLLA