| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E0872 |
|---|
| Symbol | |
|---|
| ID | 6269277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 815027 |
|---|
| End bp | 815599 |
|---|
| Gene Length | 573 bp |
|---|
| Protein Length | 190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641725038 |
|---|
| Product | putative Tail fiber assembly protein homolog |
|---|
| Protein accession | YP_001879565 |
|---|
| Protein GI | 187733104 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5525] Bacteriophage tail assembly protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTCA GAATGAGTGA ACAAGCACGG ACCATAAAAA TTTATAATCT GCTGGCCGGA
ACTAATGAAT TTATTGGTGA AGGTGACGCA TATATTCCGC CTCATACAGG TCTGCCAGCA
AACAGTACCG ATATTGCACC ACCAGATATT CCTGCTGGCT TTGTGGCTGT TTTCAACAGT
GATGAGGCAT CGTGGCATCT CGTTGAAGAT CATCGGGGTA AAACGGTTTA TGACGTGGCT
TCCGGCGACG CGTTATTTAT TTCTGAACTC GGCTCATTAC CGGGAAATGT CACTTGGTTA
TCCCCGGAAG GGGAGTTTCA GAAGTGGAAC GGCACAGCCT GGGTGAAGGA TACGGAAGCA
GAAAAACTCT TCCGGATCCG GGAGGCGGAA GAGAAAAAGA CAAGATTAAT CCAGGAAGCG
ACTGATAACA TAACAATTCT GCAGGATGCT ATTAATTTTG AAATGGCAAC TGATGAGGAG
GTTTCGATGC TATCTTCCTG GAAAAAATAC CGGGTATTAG TGAGTCGGAT TGATATAAAT
ACAGCCCCGG ATATCGTATG GCCTGAGCTG TGA
|
|---|
| Protein sequence | MAFRMSEQAR TIKIYNLLAG TNEFIGEGDA YIPPHTGLPA NSTDIAPPDI PAGFVAVFNS
DEASWHLVED HRGKTVYDVA SGDALFISEL GSLPGNVTWL SPEGEFQKWN GTAWVKDTEA
EKLFRIREAE EKKTRLIQEA TDNITILQDA INFEMATDEE VSMLSSWKKY RVLVSRIDIN
TAPDIVWPEL
|
|---|
| |