Gene SbBS512_E0745 details

Gene Information

• Locus tag: SbBS512_E0745
• Symbol: ccmF
• ID: 6269143
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: +
• Start bp: 701252
• End bp: 703195
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 641724931
• Product: cytochrome c-type biogenesis protein CcmF
• Protein accession: YP_001879459
• Protein GI: 187730323
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1138] Cytochrome c biogenesis factor
• TIGRFAM ID: [TIGR00353] c-type cytochrome biogenesis protein CcmF

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 0.202682
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGCCGG AAATTGGAAA CGGGCTGCTG TGCCTGGCGC TGGGAATTGC GCTGCTGCTG 
TCCGTGTATC CGCTATGGGG CGTGGCGCGC GGAGATGCGC GCATGATGGC GTCTTCCCGC 
TTGTTTGCCT GGCTGCTGTT TATGTCTGTG GCTGGCGCAT TTCTGGTGCT GGTCAATGCT 
TTCGTGGTCA ACGACTTTAC CGTCACCTAT GTTGCCAGCA ACTCCAATAC CCAGCTTCCG 
GTGTGGTATC GCGTGGCGGC TACCTGGGGC GCGCATGAAG GTTCGCTTCT GCTGTGGGTG 
CTGCTGATGA GCGGCTGGAC CTTTGCGGTG GCGATTTTTA GTCAGCGTAT TCCGCTGGAT 
ATTGTGGCCC GTGTACTGGC GATAATGGGG ATGGTCAGCG TCGGCTTTTT GCTGTTCATT 
CTCTTTACCT CTAACCCGTT CTCACGCACG CTGCCGAACT TCCCAATTGA AGGGCGCGAT 
CTTAACCCGC TGTTACAGGA TCCGGGGCTG ATCTTCCATC CGCCTCTGCT TTATATGGGG 
TACGTGGGTT TCTCGGTGGC GTTTGCTTTT GCCATTGCTT CTTTGCTGAG CGGGCGTCTG 
GACAGCACTT ATGCGCGTTT TACTCGCCCG TGGACGCTGG CGGCGTGGAT TTTCCTGACG 
CTCGGCATTG TGCTCGGTTC CGCATGGGCC TATTACGAAC TCGGCTGGGG GGGCTGGTGG 
TTCTGGGATC CGGTAGAAAA CGCCTCGTTT ATGCCGTGGC TGGTGGGGAC TGCGCTGATG 
CACTCACTGG CGGTCACTGA ACAACGCGCC AGCTTCAAAG CGTGGACATT ACTGCTGGCA 
ATCAGTGCCT TCTCGTTGTG TCTGCTGGGG ACTTTCCTGG TGCGTTCCGG CGTGCTGGTA 
TCGGTACACG CGTTTGCCTC TGATTCGGCA CGCGGTATGT TTATCCTCGC CTTTATGGTA 
CTGGTGATTG GTGGTTCGCT GCTGCTGTTT GCCGCGCGTG GACACAAAGT TCGCTCACGC 
GTAAACAATG CGCTGTGGTC GCGGGAATCT CTGCTGTTAG CGAACAACGT TTTGTTGGTC 
GCCGCGATGC TGGTGGTATT ACTGGGGACG CTGCTGCCGC TGGTGCACAA GCAACTGGGA 
CTGGGCAGTA TTTCGATTGG CGAACCGTTC TTCAACACCA TGTTTACCTG GCTGATGGTG 
CCGTTTGCGC TGCTGCTTGG TGTCGGTCCT CTGGTGCGCT GGGGGCGCGA TCGCCCACGT 
AAAATCCGCA ATTTATTGAT TATCGCCTTC ATCTCAACGC TGGTGCTGTC GCTGCTGCTG 
CCGTGGCTGT TCGAAAGCAA AGTTGTGGCG ATGACGGTGC TCGGCCTGGC AATGGCCTGC 
TGGATTGCTG TGCTGGCAAT TGCGGAAGCT GCGCTGCGTA TTTCACGTGG CACGAAAACC 
ACCTTCAGTT ATTGGGGAAT GGTGGCGGCT CACCTGGGGC TGGCAGTGAC AATTGTTGGT 
ATTGCCTTTA GCCAGAACTA TAGCGTTGAG CGTGATGTGC GCATGAAGTC CGGCGATAGC 
GTCGATATTC ATGAATATCG CTTCACCTTC CGTGATGTCA AAGAGGTGAC TGGCCCGAAC 
TGGCGCGGCG GTGTGGCGAC TATTGGCGTA ACGCGAGAGG GTAAACCGGA AACGGTGCTG 
TATGCGGAAA AACGTTATTA CAACACTGCC GGGTCGATGA TGACCGAAGC GGCGATTGAC 
GGCGGCATCA CGCGTGACCT GTACGCCGCG CTCGGTGAAG AGCTGGAAAA CGGCGCGTGG 
GCCGTGCGTC TTTACTACAA ACCGTTTGTT CGCTGGATTT GGGCGGGCGG GCTGATGATG 
GCGTTGGGCG GACTGCTGTG TCTGTTTGAT CCTCGCTATC GTAAGCGCGT GAGTCCGCAA 
AAAACTGCGC CGGAGGCTGT ATGA 

 

Protein sequence

MMPEIGNGLL CLALGIALLL SVYPLWGVAR GDARMMASSR LFAWLLFMSV AGAFLVLVNA 
FVVNDFTVTY VASNSNTQLP VWYRVAATWG AHEGSLLLWV LLMSGWTFAV AIFSQRIPLD 
IVARVLAIMG MVSVGFLLFI LFTSNPFSRT LPNFPIEGRD LNPLLQDPGL IFHPPLLYMG 
YVGFSVAFAF AIASLLSGRL DSTYARFTRP WTLAAWIFLT LGIVLGSAWA YYELGWGGWW 
FWDPVENASF MPWLVGTALM HSLAVTEQRA SFKAWTLLLA ISAFSLCLLG TFLVRSGVLV 
SVHAFASDSA RGMFILAFMV LVIGGSLLLF AARGHKVRSR VNNALWSRES LLLANNVLLV 
AAMLVVLLGT LLPLVHKQLG LGSISIGEPF FNTMFTWLMV PFALLLGVGP LVRWGRDRPR 
KIRNLLIIAF ISTLVLSLLL PWLFESKVVA MTVLGLAMAC WIAVLAIAEA ALRISRGTKT 
TFSYWGMVAA HLGLAVTIVG IAFSQNYSVE RDVRMKSGDS VDIHEYRFTF RDVKEVTGPN 
WRGGVATIGV TREGKPETVL YAEKRYYNTA GSMMTEAAID GGITRDLYAA LGEELENGAW 
AVRLYYKPFV RWIWAGGLMM ALGGLLCLFD PRYRKRVSPQ KTAPEAV